[precommit] fixed yapf compatiblity issue with pyproject

[FrankLeeeee]

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Fixed #3016 .

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This PR fixed the pre-commit error due to the compatibility issue between .pre-commit-config.yaml and pyproject.toml.

Below is a screenshot of successful pre-commit run after this bug fix.

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[FrankLeeeee]

This PR is no longer needed due to #3022