CytoTour

CytoTour, a tool to infer and mark the ligand-receptor-target singaling tour within receivers.

Prerequisite

Please use the following command to clone the repository.

git clone https://github.com/deepomicslab/CytoTour.git

python CytoTour.py lr_db.csv pathway_db.tsv imputation_spinalcord.h5ad

or

python CytoTour.py lr_db.csv pathway_db.tsv st_meta.csv st_data.csv

For more information, please use python CytoTour.py -h or python CytoTour.py --help.

Name		Name	Last commit message	Last commit date
Latest commit History 1 Commit
__pycache__		__pycache__
.gitignore		.gitignore
Cytograph.py		Cytograph.py
README.md		README.md
flow_max.py		flow_max.py
lr_database.csv		lr_database.csv
pathways.tsv		pathways.tsv
pdac.h5ad		pdac.h5ad
st_data.csv		st_data.csv
st_meta.csv		st_meta.csv