Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Properly ingest ko terms and COG pathways #1459

Merged
merged 2 commits into from
Nov 15, 2024
Merged

Conversation

naglepuff
Copy link
Collaborator

Fix #1450
Fix #1451

Fix some bugs that prevented KEGG orthologs and modules, and COG pathways from being ingested.

Iron out some bugs to ensure all of the terms get ingested properly.
Pathways were being skipped due to improper use of keys in a python
dictionary, and KO orthologies and modules were not added because they
were not being associated with the correct hierarchy.
There is only one value in cog_term_to_text for cog pathways. Rather
than store redundant data, display this in a reasonable way on the
frontend.
@naglepuff naglepuff requested a review from marySalvi November 15, 2024 20:40
@naglepuff naglepuff merged commit 54a24ea into main Nov 15, 2024
2 checks passed
@naglepuff naglepuff deleted the 1451-fix-cog-pathway-ingest branch November 15, 2024 21:21
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
2 participants