Try broader bl-categories update query

monarch-initiative · Oct 5, 2022 · 85233a0 · 85233a0
1 parent ffa318c
commit 85233a0
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Showing 2 changed files with 1 addition and 12 deletions.
diff --git a/src/ontology/phenio.Makefile b/src/ontology/phenio.Makefile
@@ -55,8 +55,6 @@ $(BLMODEL):
 
 $(ONT).owl: $(ONT)-full.owl $(BLMODEL)
 	$(ROBOT) merge --input $< --input $(BLMODEL) \
-			 reason --reasoner ELK \
-			 reduce \
 			 query --update $(BLQUERY) \
 			 unmerge --input $(BLMODEL) \
 			 annotate --ontology-iri $(URIBASE)/$@ $(ANNOTATE_ONTOLOGY_VERSION) \

diff --git a/src/sparql/bl-categories.ru b/src/sparql/bl-categories.ru
@@ -13,20 +13,11 @@ INSERT {
 }
 WHERE {
   {
-    ?biolink_category skos:exactMatch ?entity_to_type .
+    ?biolink_category (skos:exactMatch|skos:narrowMatch)+ ?entity_to_type .
     ?subject (rdf:type|rdfs:subClassOf|owl:equivalentClass|^owl:equivalentClass|owl:sameAs|^owl:sameAs)* ?entity_to_type .
     FILTER(STRSTARTS(str(?biolink_category),"https://w3id.org/biolink/vocab/"))
     FILTER(isIRI(?subject))
     FILTER(isIRI(?biolink_category))
     FILTER(isIRI(?entity_to_type))
   }
-  UNION
-  {
-    ?biolink_category skos:narrowMatch ?entity_to_type .
-    ?subject rdfs:subClassOf+ ?entity_to_type .
-    FILTER(STRSTARTS(str(?biolink_category),"https://w3id.org/biolink/vocab/"))
-    FILTER(isIRI(?subject))
-    FILTER(isIRI(?biolink_category))
-    FILTER(isIRI(?entity_to_type))
-  }
 }