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Switch to use uPheno base and import phenotype ontologies separately #94

Merged
merged 14 commits into from
Nov 25, 2024
Merged

Switch to use uPheno base and import phenotype ontologies separately #94

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7436bd8
Switch to use uPheno base and import phenotype ontologies separately
matentzn Nov 18, 2024
5fed463
Update phenio-odk.yaml
matentzn Nov 19, 2024
b7569bf
Update phenio-odk.yaml
matentzn Nov 20, 2024
8d54f6d
Removing unnecessary namespaces from final phenio.owl
matentzn Nov 20, 2024
4e7a5cc
Stripping the edit file of all things but metadata
matentzn Nov 20, 2024
e43b533
Add CL and Uberon mappings
matentzn Nov 23, 2024
7c09490
Remove import from git index
matentzn Nov 23, 2024
6e0a853
Update ODK config and related files
matentzn Nov 23, 2024
78b71f6
Create file for ROBOT renames
matentzn Nov 23, 2024
77c9a1f
Added MAXO component
matentzn Nov 23, 2024
14ab476
Add MAXO to ODK config
matentzn Nov 23, 2024
ab0c270
MISC refactor phenio.Makefile
matentzn Nov 23, 2024
f507314
Add proper NCBIGENE and HGNC imports
matentzn Nov 25, 2024
cd87f57
Fix bridges in PHENIO
matentzn Nov 25, 2024
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Remove import from git index 
It has become too big
@matentzn
matentzn committed Nov 23, 2024
commit 7c09490314666e1cfde5b631d16a9401126d89ef
1 change: 1 addition & 0 deletions .gitignore
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Original file line number Diff line number Diff line change
@@ -50,3 +50,4 @@ src/ontology/debug.log
src/ontology/phenio-relation-graph.tar.gz
src/ontology/phenio-relation-graph.tsv
src/ontology/phenio-test.owl
src/ontology/imports/merged_import.owl
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