scigraph-docker

Build scigraph docker image with the monarch configs. Uses master HEAD from the SciGraph github repo.

Generate the monarch config files locally:

./conf/build-load-conf.sh data
./conf/build-service-conf.sh data

For building the Monarch Ontology graph:

./conf/build-load-conf.sh ontology
./conf/build-service-conf.sh ontology

Build the SciGraph Image:

docker build -t scigraph .

Load the graph:

docker run \
  -v `pwd`/data:/data \
  -v `pwd`/conf:/scigraph/conf \
  scigraph load-scigraph monarchLoadConfiguration.yaml

Run the services:

docker run \
  -v `pwd`/data:/data \
  -v `pwd`/conf:/scigraph/conf \
  -d -p 9000:9000 \
  --name scigraph-services \
  scigraph start-scigraph-service monarchConfiguration.yaml

Stop the services:

docker stop scigraph-services

Read logs of the services:

docker logs scigraph-services

Tips, remove all the local images

docker rm $(docker ps -a -q)

docker rmi $(docker images -q)