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DESEQ2_NORM bugfix #226

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merged 2 commits into from
Jan 23, 2024
Merged

DESEQ2_NORM bugfix #226

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5214258
Added gene_id_col to DESEQ2_NORM modules.config entry
WackerO Jan 18, 2024
56415b0
Update changelog, prettier
WackerO Jan 23, 2024
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8 changes: 4 additions & 4 deletions .devcontainer/devcontainer.json
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Original file line number Diff line number Diff line change
Expand Up @@ -18,11 +18,11 @@
"python.linting.flake8Path": "/opt/conda/bin/flake8",
"python.linting.pycodestylePath": "/opt/conda/bin/pycodestyle",
"python.linting.pydocstylePath": "/opt/conda/bin/pydocstyle",
"python.linting.pylintPath": "/opt/conda/bin/pylint"
"python.linting.pylintPath": "/opt/conda/bin/pylint",
},

// Add the IDs of extensions you want installed when the container is created.
"extensions": ["ms-python.python", "ms-python.vscode-pylance", "nf-core.nf-core-extensionpack"]
}
}
"extensions": ["ms-python.python", "ms-python.vscode-pylance", "nf-core.nf-core-extensionpack"],
},
},
}
1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -12,6 +12,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0

### `Fixed`

- [[#226](https://github.com/nf-core/differentialabundance/pull/226) - Fix DESEQ2_NORM in modules.config ([@WackerO](https://github.com/WackerO), review by [@pinin4fjords](https://github.com/pinin4fjords))
- [[#221](https://github.com/nf-core/differentialabundance/pull/221) - Update shinyngs modules to address density plots issue ([@pinin4fjords](https://github.com/pinin4fjords), review by [@maxulysse](https://github.com/maxulysse))
- [[#223](https://github.com/nf-core/differentialabundance/pull/223)] - tabulartogseacls fixes ([@pinin4fjords](https://github.com/pinin4fjords), review by [@maxulysse](https://github.com/maxulysse))
- [[#213](https://github.com/nf-core/differentialabundance/pull/213)] - Fix volcano plot legend ([@pinin4fjords](https://github.com/pinin4fjords), review by [@WackerO](https://github.com/WackerO))
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1 change: 1 addition & 0 deletions conf/modules.config
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Expand Up @@ -171,6 +171,7 @@ process {
],
]
ext.args = { [
"--gene_id_col \"${params.features_id_col}\"",
"--sample_id_col \"${params.observations_id_col}\"",
"--test $params.deseq2_test",
"--fit_type $params.deseq2_fit_type",
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