Merge pull request #227 from maxulysse/fix_all_again

fix sratools
nf-core · Oct 17, 2023 · fc23783 · fc23783
2 parents 4bd7d3a + cedd600
commit fc23783
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Showing 2 changed files with 8 additions and 1 deletion.
diff --git a/conf/test_data.config b/conf/test_data.config
@@ -24,6 +24,12 @@ params {
     }
 
     test_data {
+        'sarscov2'{
+            'illumina' {
+                SRR11140744_tar_gz                  = "${params.test_data_base}/data/genomics/sarscov2/illumina/sra/SRR11140744.tar.gz"
+                SRR13255544_tar_gz                  = "${params.test_data_base}/data/genomics/sarscov2/illumina/sra/SRR13255544.tar.gz"
+            }
+        }
         'generic' {
             'config' {
                 ncbi_user_settings                  = "${params.test_data_base}/data/generic/config/ncbi_user_settings.mkfg"

diff --git a/modules.json b/modules.json
@@ -8,7 +8,8 @@
                     "custom/dumpsoftwareversions": {
                         "branch": "master",
                         "git_sha": "4125fb0c2152efbcec8d9ed71a756c9274b2f7f5",
-                        "installed_by": ["modules"]
+                        "installed_by": ["modules"],
+                        "patch": "modules/nf-core/custom/dumpsoftwareversions/custom-dumpsoftwareversions.diff"
                     },
                     "custom/sratoolsncbisettings": {
                         "branch": "master",