Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

fix sratools #227

Merged
merged 2 commits into from
Oct 17, 2023
Merged

fix sratools #227

merged 2 commits into from
Oct 17, 2023

Conversation

maxulysse
Copy link
Member

No description provided.

@maxulysse maxulysse merged commit fc23783 into nf-core:refactor Oct 17, 2023
6 checks passed
@maxulysse maxulysse deleted the fix_all_again branch October 17, 2023 15:58
@github-actions
Copy link

github-actions bot commented Oct 17, 2023 •
edited
Loading

nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit cedd600

+| ✅ 134 tests passed       |+
#| ❔  18 tests were ignored |#
!| ❗   5 tests had warnings |!

❗ Test warnings:

  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your preferred methods description, e.g. add publication citation for this pipeline
  • pipeline_todos - TODO string in meta.yml: #Add a description of the subworkflow and list keywords
  • pipeline_todos - TODO string in meta.yml: #Add a list of the modules and/or subworkflows used in the subworkflow
  • pipeline_todos - TODO string in meta.yml: #List all of the channels used as input with a description and their structure
  • pipeline_todos - TODO string in meta.yml: #List all of the channels used as output with a descriptions and their structure

❔ Tests ignored:

  • files_exist - File is ignored: .github/workflows/awsfulltest.yml
  • files_exist - File is ignored: .github/workflows/awstest.yml
  • files_exist - File is ignored: assets/multiqc_config.yml
  • files_exist - File is ignored: conf/igenomes.config
  • files_exist - File is ignored: conf/modules.config
  • files_exist - File is ignored: lib/NfcoreTemplate.groovy
  • files_exist - File is ignored: lib/Utils.groovy
  • files_exist - File is ignored: lib/WorkflowFetchngs.groovy
  • files_exist - File is ignored: lib/WorkflowMain.groovy
  • files_exist - File is ignored: lib/nfcore_external_java_deps.jar
  • files_unchanged - File ignored due to lint config: .gitattributes
  • files_unchanged - File ignored due to lint config: assets/sendmail_template.txt
  • files_unchanged - File does not exist: lib/nfcore_external_java_deps.jar
  • files_unchanged - File ignored due to lint config: lib/NfcoreTemplate.groovy
  • files_unchanged - File ignored due to lint config: .gitignore or .prettierignore or pyproject.toml
  • actions_ci - actions_ci
  • actions_awstest - 'awstest.yml' workflow not found: /home/runner/work/fetchngs/fetchngs/.github/workflows/awstest.yml
  • multiqc_config - 'assets/multiqc_config.yml' not found

✅ Tests passed:

Run details

  • nf-core/tools version 2.10
  • Run at 2023-10-17 16:02:58

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Reviewers

@adamrtalbot adamrtalbot adamrtalbot approved these changes

Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

Successfully merging this pull request may close these issues.
2 participants
@maxulysse @adamrtalbot