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Add logic to skip cardannotation #1433

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Add logic to skip cardannotation

Add logic to skip cardannotation #1433

Triggered via pull request January 15, 2025 13:57
@jasmezzjasmezz
opened #437
fix-rgi-db-name-issue
Status Failure
Total duration 32m 49s
Artifacts –

ci.yml

on: pull_request
Choose nextflow versions to test against depending on target branch
0s
Choose nextflow versions to test against depending on target branch
Matrix: test
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28 errors and 25 warnings
Run pipeline with test data (24.04.2 | test | docker)
Process completed with exit code 1.
Run pipeline with test data (24.04.2 | test | docker)
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Run pipeline with test data (latest-everything | test_taxonomy_pyrodigal | docker)
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Run pipeline with test data (latest-everything | test_taxonomy_pyrodigal | docker)
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Run pipeline with test data (24.04.2 | test_prokka | docker)
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Run pipeline with test data (24.04.2 | test_prokka | docker)
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Run pipeline with test data (latest-everything | test_bakta | docker)
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Run pipeline with test data (latest-everything | test_bakta | docker)
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Run pipeline with test data (latest-everything | test_prokka | docker)
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Run pipeline with test data (24.04.2 | test_bakta | docker)
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Run pipeline with test data (24.04.2 | test_bakta | docker)
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Run pipeline with test data (24.04.2 | test_preannotated | docker)
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Run pipeline with test data (24.04.2 | test_preannotated | docker)
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Run pipeline with test data (latest-everything | test_preannotated | docker)
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Run pipeline with test data (latest-everything | test_preannotated | docker)
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Run pipeline with test data (latest-everything | test_taxonomy_bakta | docker)
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Run pipeline with test data (latest-everything | test_taxonomy_bakta | docker)
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Run pipeline with test data (24.04.2 | test_taxonomy_bakta | docker)
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Run pipeline with test data (24.04.2 | test_taxonomy_bakta | docker)
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Run pipeline with test data (latest-everything | test_taxonomy_prokka | docker)
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Run pipeline with test data (latest-everything | test_taxonomy_prokka | docker)
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Run pipeline with test data (24.04.2 | test_taxonomy_prokka | docker)
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Run pipeline with test data (24.04.2 | test_taxonomy_prokka | docker)
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Run pipeline with test data (24.04.2 | test_taxonomy_pyrodigal | docker)
Process completed with exit code 1.
Run pipeline with test data (24.04.2 | test_taxonomy_pyrodigal | docker)
Process completed with exit code 1.
Choose nextflow versions to test against depending on target branch
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipeline with test data (24.04.2 | test | docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipeline with test data (latest-everything | test_nothing | docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipeline with test data (24.04.2 | test_nothing | docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipeline with test data (latest-everything | test_taxonomy_pyrodigal | docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipeline with test data (24.04.2 | test_prokka | docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipeline with test data (latest-everything | test_bakta | docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipeline with test data (latest-everything | test_prokka | docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipeline with test data (24.04.2 | test_bakta | docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipeline with test data (latest-everything | test | docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipeline with test data (24.04.2 | test_preannotated | docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipeline with test data (latest-everything | test_preannotated | docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipeline with test data (latest-everything | test_bgc_pyrodigal | docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipeline with test data (24.04.2 | test_bgc_prokka | docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipeline with test data (24.04.2 | test_bgc_bakta | docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipeline with test data (latest-everything | test_bgc_bakta | docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipeline with test data (latest-everything | test_taxonomy_bakta | docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipeline with test data (24.04.2 | test_taxonomy_bakta | docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipeline with test data (latest-everything | test_bgc_prokka | docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipeline with test data (latest-everything | test_taxonomy_prokka | docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipeline with test data (24.04.2 | test_bgc_pyrodigal | docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipeline with test data (24.04.2 | test_taxonomy_prokka | docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipeline with test data (24.04.2 | test_taxonomy_pyrodigal | docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipeline with test data (24.04.2 | test_preannotated_bgc | docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipeline with test data (latest-everything | test_preannotated_bgc | docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636