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Merging 3.1.0 and 3.1.1 template updates #1364

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Merging 3.1.0 and 3.1.1 template updates

Merging 3.1.0 and 3.1.1 template updates #1364

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Test nanopore (24.04.2 | --artic_minion_caller medaka --sequencing_summary false --fast5_dir false --artic_minion_medaka_model ./r941_min_high_g360_model.hdf5 --freyja_depthcutoff 1 | docker)

Test nanopore (24.04.2 | --artic_minion_caller medaka --sequencing_summary false --fast5_dir false --artic_minion_medaka_model ./r941_min_high_g360_model.hdf5 --freyja_depthcutoff 1 | docker)
succeeded Dec 30, 2024 in 37m 45s