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Merging 3.1.0 and 3.1.1 template updates #1364

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Merging 3.1.0 and 3.1.1 template updates

Merging 3.1.0 and 3.1.1 template updates #1364

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1 warning

Test nanopore (latest-everything | --additional_annotation ./GCA_009858895.3_ASM985889v3_genomic.gtf.gz --freyja_depthcutoff 1 | docker)

Test nanopore (latest-everything | --additional_annotation ./GCA_009858895.3_ASM985889v3_genomic.gtf.gz --freyja_depthcutoff 1 | docker)
succeeded Dec 30, 2024 in 25m 20s