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Set bowtie version to <2.4 #1

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oliver-tarrant-tessella
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@oliver-tarrant-tessella oliver-tarrant-tessella commented Sep 16, 2020

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Change Bowtie version to resolve bug when running ariba commands. Ariba checks the dependency versions are correct before executing and the latest Bowtie2 version does not report its version correctly.

More details on this can be found here: bioconda/bioconda-recipes#24010

Testing:

The NGS-MSTB docker image has been rebuilt using the updated Conda recipe and all ariba tests pass.

@oliver-tarrant-tessella oliver-tarrant-tessella deleted the bugfix/fix-dependency-version branch September 16, 2020 13:38
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Closed for now while investigating a potential pandas version issue

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