Fixes #2732 ntr cxg atretic theca cell

[Caroline-99]

Fixes #2732

[Caroline-99]

#gogoeditdiff

[github-actions]

Here's a diff of how these changes impact the classified ontology (on -base file):

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-base.owl
• Version IRI: http://purl.obolibrary.org/obo/cl/releases/2024-11-06/cl-base.owl
• Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-base-master.owl/cl-base.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-base.owl
• Version IRI: http://purl.obolibrary.org/obo/cl/releases/2024-11-06/cl-base.owl
• Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-base-pr.owl/cl-base.owl

Ontology imports

Ontology annotations

atretic theca cell http://purl.obolibrary.org/obo/CL_4052027

Added

• atretic theca cell contributor 0009-0000-8480-9277

• atretic theca cell comment "During atresia, theca interna and externa cells undergo distinct morphological and functional changes. Theca interna cells round up, expand in cytoplasmic area, and thicken the internal layer as organization degrades, while showing reduced STAR expression, which lowers androgen production. Theca externa cells display decreased ACTA2 expression, weakening structural integrity."

  • hasDbXref "PMID:38069168"

• atretic theca cell label "atretic theca cell"

• atretic theca cell IAO_0000115 "A theca cell undergoing atresia, characterized by distinct morphological changes including hypertrophy, altered cell shape, and disrupted layered organization. This cell exhibits reduced steroidogenic capacity and changes in surrounding vascularization. The onset of theca cell atresia can vary, occurring at different stages of follicle atresia depending on the phase of folliculogenesis."

  • hasDbXref "PMID:20628033"

  • hasDbXref "PMID:38069168"

• atretic theca cell date "2024-11-06T10:10:51Z"^^dateTime

• Class: atretic theca cell

• atretic theca cell SubClassOf atretic follicular cell of ovary

• atretic theca cell SubClassOf RO_0002202 some theca cell

[github-actions]

Here's a diff of your edit file (unreasoned)

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
• Version IRI: None
• Loaded from: file:/__w/cell-ontology/cell-ontology/master/src/ontology/cl-edit.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
• Version IRI: None
• Loaded from: file:/__w/cell-ontology/cell-ontology/branch/src/ontology/cl-edit.owl

Ontology imports

Ontology annotations

atretic theca cell http://purl.obolibrary.org/obo/CL_4052027

Added

• atretic theca cell contributor 0009-0000-8480-9277

• atretic theca cell comment "During atresia, theca interna and externa cells undergo distinct morphological and functional changes. Theca interna cells round up, expand in cytoplasmic area, and thicken the internal layer as organization degrades, while showing reduced STAR expression, which lowers androgen production. Theca externa cells display decreased ACTA2 expression, weakening structural integrity."

  • database_cross_reference "PMID:38069168"

• atretic theca cell label "atretic theca cell"

• atretic theca cell definition "A theca cell undergoing atresia, characterized by distinct morphological changes including hypertrophy, altered cell shape, and disrupted layered organization. This cell exhibits reduced steroidogenic capacity and changes in surrounding vascularization. The onset of theca cell atresia can vary, occurring at different stages of follicle atresia depending on the phase of folliculogenesis."

  • database_cross_reference "PMID:38069168"

  • database_cross_reference "PMID:20628033"

• atretic theca cell date "2024-11-06T10:10:51Z"^^dateTime

• Class: atretic theca cell

• atretic theca cell SubClassOf atretic follicular cell of ovary

• atretic theca cell SubClassOf develops from some theca cell

ovarian follicle atresia http://purl.obolibrary.org/obo/GO_0001552

Added

• Class: ovarian follicle atresia

[Caroline-99]

#gogoeditdiff