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e.g. , when pairtools flip --chroms-path hg38.reduced.chrom.sizes p1.pairs, where hg38.reduced.chrom.sizes does not have un-assembled contigs - it fails when encounters unrecognized name - e.g. KeyError: 'chrUn_KI270438v1'
in the same situation pairtools parse behaves differently - it flips what it can according to hg38.reduced.chrom.sizes and flips lexicographically everything else
no big deal - but we'd rather have it documented - to fix later
The text was updated successfully, but these errors were encountered:
sergpolly
changed the title
standalone flip fails when "reduced.chrom.sizes" provided, should do lexicographical sort
standalone flip fails when "reduced.chrom.sizes" provided, should go lexicographical
Jan 25, 2021
e.g. , when
pairtools flip --chroms-path hg38.reduced.chrom.sizes p1.pairs
, wherehg38.reduced.chrom.sizes
does not have un-assembled contigs - it fails when encounters unrecognized name - e.g.KeyError: 'chrUn_KI270438v1'
in the same situation
pairtools parse
behaves differently - it flips what it can according tohg38.reduced.chrom.sizes
and flips lexicographically everything elseno big deal - but we'd rather have it documented - to fix later
The text was updated successfully, but these errors were encountered: