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@WIS-MICC-CellObservatory MICC Cell Observatory at Weizmann Institute of Science

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    22 repositories

    • Peroxisome-in-Yeast-cells

      Public
      This Fiji macro script is designed to process microscopy images of yeast cells and their peroxisomes. It performs segmentation, calculates ECI-1 protein intensities inside and outside the organelles, and outputs statistical measurements.
      ImageJ Macro
      •
      MIT License
      •0•0•0•0•Updated Jan 23, 2025Jan 23, 2025

    • Mitochondria-structure-and-Lipid-droplets-clustering

      Public
      Identify the structure of the mitochondria and the lipid droplets clustering in cells under starvation
      ImageJ Macro
      •
      MIT License
      •0•0•0•0•Updated Nov 26, 2024Nov 26, 2024

    • compensatory-proliferation-in-the-Drosophila-wing-

      Public
      Good question
      ImageJ Macro
      •
      MIT License
      •0•0•0•0•Updated Sep 8, 2024Sep 8, 2024

    • Utils

      Public
      Utility ImageJ macros and other scripts
      ImageJ Macro
      •
      MIT License
      •0•2•0•0•Updated Jul 28, 2024Jul 28, 2024

    • BrainyCrystals

      Public
      ImageJ Macro
      •
      MIT License
      •0•0•0•0•Updated Jun 30, 2024Jun 30, 2024

    • BacteriaCellWallThickness

      Public
      ImageJ Macro
      •
      MIT License
      •0•3•0•0•Updated Jun 30, 2024Jun 30, 2024

    • SemiManual_Myelin_Profiles

      Public
      MIT License
      •0•0•0•0•Updated Jun 30, 2024Jun 30, 2024

    • FiberThickness

      Public
      Measure thickness of horizontal fiber
      ImageJ Macro
      •
      MIT License
      •0•0•0•0•Updated Jun 30, 2024Jun 30, 2024

    • PME_Kinetics

      Public
      Evaluating paternal mitochondrial elimination kinetics in Drosophila embryos
      ImageJ Macro
      •
      MIT License
      •0•0•0•0•Updated Jun 3, 2024Jun 3, 2024

    • OsteoclastsWorkflow-Tutorial

      Public
      Incorporating Machine learning tools into Image Analysis workflows using Fiji, Ilastik and StarDist
      ImageJ Macro
      •
      MIT License
      •0•2•0•0•Updated May 22, 2024May 22, 2024

    • QuPathTutorial

      Public
      Groovy
      •
      MIT License
      •0•1•0•0•Updated May 22, 2024May 22, 2024

    • BreastCancerHeterogeneity

      Public
      Groovy
      •
      MIT License
      •0•0•0•0•Updated May 22, 2024May 22, 2024

    • Atg8a-and-Axoneme-analysis

      Public
      We use Arivis pipeline to analyze the distance between Atg8a and the Axon
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 1, 2024Apr 1, 2024

    • Neurons-Macrophages-colocalization-in-lung

      Public
      Calculate the distance between neurons and different macrophage cells in the lung
      ImageJ Macro
      •
      MIT License
      •0•0•0•0•Updated Dec 28, 2023Dec 28, 2023

    • Silk-threads-analysis

      Public
      Semi-automated image analysis of the sizes of silk nano-fibrils and nano-bundles was performed using a Fiji and Ilastiknd la
      ImageJ Macro
      •
      MIT License
      •0•0•0•0•Updated Nov 27, 2023Nov 27, 2023

    • GC-Analysis

      Public
      Identify distinct regions within the Germinal center (GC) using follicular dendritic cell (FDC) markers CD23 and CD35.
      ImageJ Macro
      •
      MIT License
      •0•0•0•0•Updated Nov 12, 2023Nov 12, 2023

    • Bacteria-granule-colocalization-quantefication

      Public
      Quantefication of colocalized bacteria and granule
      ImageJ Macro
      •
      MIT License
      •0•0•0•0•Updated Sep 19, 2023Sep 19, 2023

    • Granules-In-Bacteria

      Public
      Size and distribution estimation of granules in bacteria
      MIT License
      •0•0•0•0•Updated Jun 8, 2023Jun 8, 2023

    • Crypts_SpatialOrganization

      Public
      Segment colon crypts from z-projection of SHG images of fibrillar collagen and Quantify fibrosis by analyzing the spatial organization of the crypts.
      ImageJ Macro
      •
      MIT License
      •1•2•0•0•Updated Jun 27, 2022Jun 27, 2022

    • LaurdanInLiveCellImaging

      Public
      Macro for paper : Laurdan in live cell imaging
      ImageJ Macro
      •0•1•1•0•Updated Jan 4, 2022Jan 4, 2022

    • Myelin_Profiles_PNS

      Public
      Segmentation and quantification of mature isolated myelin rings from serialEM of PNS
      MIT License
      •0•1•0•0•Updated Nov 19, 2020Nov 19, 2020

    • Intestinal_Barrier_Function

      Public
      Morphological analysis of Intestinal Barrier Function based on images of Epithelial Tight Junction (TJ)
      MIT License
      •0•1•0•0•Updated Nov 8, 2020Nov 8, 2020