Repositories list

• early-metazoa-3D-chromatin

  Public
  Code to reproduce analyses in Kim et al. 2024

  R

  •0•0•0•0•Updated Jan 20, 2025Jan 20, 2025

• Stylophora_single_cell_atlas

  Public
  Code for the analyses in the paper "A stony coral cell atlas illuminates the molecular and cellular basis of coral symbiosis, calcification, and immunity"

  R

  •2•3•0•0•Updated Jan 4, 2025Jan 4, 2025

• shinyscdb

  Public
  shiny

  R

  •0•0•0•0•Updated Nov 13, 2024Nov 13, 2024

• GeneExt

  Public
  GeneExt - Gene extension for improved scRNA-seq data counting

  Python

  •

  GNU General Public License v3.0

  •4•13•0•0•Updated May 29, 2024May 29, 2024

• placozoa-cell-type-evolution-code

  Public
  Code for our work on cell type evolution in placozoans (Najle, Grau-Bové et al., Cell 2023)

  1•0•0•0•Updated Jan 26, 2024Jan 26, 2024

• Xenoturbella_sc_atlas

  Public
  Input data and code to reproduce analyses in Robertson et al. "Single cell atlas of Xenoturbella bocki highlights the limited cell-type complexity of a non-vertebrate deuterostome lineage "

  R

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jan 9, 2024Jan 9, 2024

• awesome-ggplot2

  Public
  A curated list of awesome ggplot2 tutorials, packages etc.

  169•0•0•0•Updated Aug 25, 2022Aug 25, 2022

• training-collection

  Public
  Collection of bioinformatics training materials

  Other

  •184•2•0•0•Updated Aug 18, 2022Aug 18, 2022

• chromatin-evolution-analysis

  Public
  A phylogenetic and proteomic reconstruction of eukaryotic chromatin evolution

  R

  •4•4•0•0•Updated Jun 10, 2022Jun 10, 2022

• wga-pipeline

  Public
  draft pipeline for WGA alignment

  Shell

  •0•2•1•0•Updated Aug 19, 2020Aug 19, 2020

• oneliners

  Public
  Useful bash one-liners for bioinformatics.

  518•0•0•0•Updated Jun 10, 2019Jun 10, 2019