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support for vcr write to disk path #345

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merged 24 commits into from
Mar 23, 2020
Merged

support for vcr write to disk path #345

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80b77fc
#290 - working on integrating vcr handling writing to disk, not done yet
sckott Jul 26, 2019
0b4ee8b
playing with buoy tests, check back in #FIXME
sckott Sep 6, 2019
fca9250
merge from master
sckott Sep 20, 2019
045fd44
merge master
sckott Oct 3, 2019
81872d7
cpc_prcp test tweaks
sckott Oct 4, 2019
119cf17
merge master changes
sckott Dec 4, 2019
1ee18ea
man file updates
sckott Dec 30, 2019
5e4ccbf
arc2 fixes, use new write to disk setup
sckott Dec 30, 2019
f8ad924
#290 writing to disk work, not done yet
sckott Dec 30, 2019
e1acf73
fixes for lcd and isd tests that also cache files
sckott Dec 30, 2019
6944bbf
Merge branch 'master' into vcr-write-disk
sckott Dec 30, 2019
0542c8c
fixed some tests #290
sckott Feb 18, 2020
9c44a3b
fix storms test
sckott Mar 4, 2020
3528f75
use relative paths with new vcr version
sckott Mar 14, 2020
135e472
move write to disk files to inst/ - test check on travis | ropensci/v…
sckott Mar 16, 2020
f123cad
try commenting out deleting user cached files for ersst tests
sckott Mar 16, 2020
b88cb78
comment out one ersst test, does it work now?
sckott Mar 16, 2020
e33342d
try ersst tests each with different file on disk - was previously usi…
sckott Mar 17, 2020
9b095a6
remove .Rinstignore, and try inst/test_files in .Rbuildignore if it w…
sckott Mar 17, 2020
6801399
remove inst/test_files from rbuildignore
sckott Mar 17, 2020
afbfa58
move test files back to tests/files/
sckott Mar 23, 2020
4ee0235
add .Rinstignore for ignoring test on disk files
sckott Mar 23, 2020
7898eb8
woops, needed to fix write_disk_path
sckott Mar 23, 2020
7e51f58
merge in master branch changes; use vcr master dev branch
sckott Mar 23, 2020
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4 changes: 4 additions & 0 deletions .Rinstignore
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@@ -0,0 +1,4 @@
tests/files/.*[.]csv$
tests/files/.*[.]nc$
tests/files/.*[.]gz$
tests/files/.*[.]RT$
3 changes: 2 additions & 1 deletion DESCRIPTION
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Expand Up @@ -63,8 +63,9 @@ Suggests:
purrr,
ggmap,
ropenaq,
vcr (>= 0.2.2),
vcr (>= 0.5.0.92),
webmockr
Remotes: ropensci/vcr
RoxygenNote: 7.1.0
X-schema.org-applicationCategory: Climate
X-schema.org-keywords: earth, science, climate, precipitation, temperature, storm, buoy, NCDC, NOAA, tornadoe, sea ice, ISD
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4 changes: 3 additions & 1 deletion R/arc2.R
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Expand Up @@ -33,7 +33,9 @@ arc2_get <- function(year, month, day, cache = TRUE, overwrite = FALSE, ...) {
key <- file.path(arc2_base_ftp(arc2_base(), date))
file <- file.path(arc2_cache$cache_path_get(), basename(key))
if (!file.exists(file)) {
suppressMessages(arc2_GET_write(sub("/$", "", key), file, overwrite, ...))
res <- suppressMessages(
arc2_GET_write(sub("/$", "", key), file, overwrite, ...))
file <- res$content
}
return(file)
}
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5 changes: 4 additions & 1 deletion R/buoy.R
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@@ -1,3 +1,5 @@
the_env <- new.env()

#' Get NOAA buoy data from the National Buoy Data Center
#'
#' @export
Expand Down Expand Up @@ -153,7 +155,8 @@ buoy_single_file_url <- function(dataset, buoyid, file){
get_ncdf_file <- function(path, buoyid, file, output, ...){
outpath <- sprintf("%s/%s%s", output, buoyid, file)
res <- crul::HttpClient$new(path, opts = list(...))$get(disk = outpath)
return(outpath)
the_env$res <- res
return(res$content)
}

# Download a single ncdf file
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3 changes: 2 additions & 1 deletion R/cpc.R
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Expand Up @@ -71,7 +71,8 @@ cpc_get <- function(year, month, day, us, cache = TRUE, overwrite = FALSE, ...)
key <- cpc_key(year, month, day, us)
file <- file.path(cpc_cache$cache_path_get(), basename(key))
if (!file.exists(file)) {
suppressMessages(cpc_GET_write(sub("/$", "", key), file, overwrite, ...))
res <- suppressMessages(cpc_GET_write(sub("/$", "", key), file, overwrite, ...))
file <- res$content
}
return(file)
}
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7 changes: 7 additions & 0 deletions tests/files/1945_02413099999.csv
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<!DOCTYPE HTML PUBLIC "-//IETF//DTD HTML 2.0//EN">
<html><head>
<title>404 Not Found</title>
</head><body>
<h1>Not Found</h1>
<p>The requested URL /data/local-climatological-data/access/1945/02413099999.csv was not found on this server.</p>
</body></html>
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8 changes: 8 additions & 0 deletions tests/files/Storm.1970143N19091.ibtracs_all.v03r10.csv
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IBTrACS -- Version: v03r10
Serial_Num,Season,Num,Basin,Sub_basin,Name,ISO_time,Nature,Latitude,Longitude,Wind(WMO),Pres(WMO),Center,Wind(WMO) Percentile,Pres(WMO) Percentile,Track_type,Latitude_for_mapping,Longitude_for_mapping,Current Basin,hurdat_atl_lat,hurdat_atl_lon,hurdat_atl_grade,hurdat_atl_wind,hurdat_atl_pres,td9636_lat,td9636_lon,td9636_grade,td9636_wind,td9636_pres,reunion_lat,reunion_lon,reunion_grade,reunion_wind,reunion_pres,atcf_lat,atcf_lon,atcf_grade,atcf_wind,atcf_pres,mlc_natl_lat,mlc_natl_lon,mlc_natl_grade,mlc_natl_wind,mlc_natl_pres,ds824_sh_lat,ds824_sh_lon,ds824_sh_grade,ds824_sh_wind,ds824_sh_pres,ds824_ni_lat,ds824_ni_lon,ds824_ni_grade,ds824_ni_wind,ds824_ni_pres,bom_lat,bom_lon,bom_grade,bom_wind,bom_pres,ds824_au_lat,ds824_au_lon,ds824_au_grade,ds824_au_wind,ds824_au_pres,jtwc_sh_lat,jtwc_sh_lon,jtwc_sh_grade,jtwc_sh_wind,jtwc_sh_pres,jtwc_wp_lat,jtwc_wp_lon,jtwc_wp_grade,jtwc_wp_wind,jtwc_wp_pres,td9635_lat,td9635_lon,td9635_grade,td9635_wind,td9635_pres,ds824_wp_lat,ds824_wp_lon,ds824_wp_grade,ds824_wp_wind,ds824_wp_pres,jtwc_io_lat,jtwc_io_lon,jtwc_io_grade,jtwc_io_wind,jtwc_io_pres,cma_lat,cma_lon,cma_grade,cma_wind,cma_pres,hurdat_epa_lat,hurdat_epa_lon,hurdat_epa_grade,hurdat_epa_wind,hurdat_epa_pres,jtwc_ep_lat,jtwc_ep_lon,jtwc_ep_grade,jtwc_ep_wind,jtwc_ep_pres,ds824_ep_lat,ds824_ep_lon,ds824_ep_grade,ds824_ep_wind,ds824_ep_pres,jtwc_cp_lat,jtwc_cp_lon,jtwc_cp_grade,jtwc_cp_wind,jtwc_cp_pres,tokyo_lat,tokyo_lon,tokyo_grade,tokyo_wind,tokyo_pres,neumann_lat,neumann_lon,neumann_grade,neumann_wind,neumann_pres,hko_lat,hko_lon,hko_grade,hko_wind,hko_pres,cphc_lat,cphc_lon,cphc_grade,cphc_wind,cphc_pres,wellington_lat,wellington_lon,wellington_grade,wellington_wind,wellington_pres,newdelhi_lat,newdelhi_lon,newdelhi_grade,newdelhi_wind,newdelhi_pres,nadi_lat,nadi_lon,nadi_grade,nadi_wind,nadi_pres,reunion_rmw,reunion_wind_radii_1_ne,reunion_wind_radii_1_se,reunion_wind_radii_1_sw,reunion_wind_radii_1_nw,reunion_wind_radii_2_ne,reunion_wind_radii_2_se,reunion_wind_radii_2_sw,reunion_wind_radii_2_nw,bom_mn_hurr_xtnt,bom_mn_gale_xtnt,bom_mn_eye_diam,bom_roci,atcf_rmw,atcf_poci,atcf_roci,atcf_eye,atcf_wrad34_rad1,atcf_wrad34_rad2,atcf_wrad34_rad3,atcf_wrad34_rad4,atcf_wrad50_rad1,atcf_wrad50_rad2,atcf_wrad50_rad3,atcf_wrad50_rad4,atcf_wrad64_rad1,atcf_wrad64_rad2,atcf_wrad64_rad3,atcf_wrad64_rad4,tokyo_dir50,tokyo_long50,tokyo_short50,tokyo_dir30,tokyo_long30,tokyo_short30,jtwc_??_rmw,jtwc_??_poci,jtwc_??_roci,jtwc_??_eye,jtwc_??_wrad34_rad1,jtwc_??_wrad34_rad2,jtwc_??_wrad34_rad3,jtwc_??_wrad34_rad4,jtwc_??_wrad50_rad1,jtwc_??_wrad50_rad2,jtwc_??_wrad50_rad3,jtwc_??_wrad50_rad4,jtwc_??_wrad64_rad1,jtwc_??_wrad64_rad2,jtwc_??_wrad64_rad3,jtwc_??_wrad64_rad4
N/A,Year,#,BB,BB,N/A,YYYY-MM-DD HH:MM:SS,N/A,deg_north,deg_east,kt,mb,N/A,%,%,N/A,degrees_north,degrees_east,N/A,deg_north,deg_east, ,kt,mb,deg_north,deg_east, ,kt,mb,deg_north,deg_east, ,kt,mb,deg_north,deg_east, ,kt,mb,deg_north,deg_east, ,kt,mb,deg_north,deg_east, ,kt,mb,deg_north,deg_east, ,kt,mb,deg_north,deg_east, ,kt,mb,deg_north,deg_east, ,kt,mb,deg_north,deg_east, ,kt,mb,deg_north,deg_east, ,kt,mb,deg_north,deg_east, ,kt,mb,deg_north,deg_east, ,kt,mb,deg_north,deg_east, ,kt,mb,deg_north,deg_east, ,kt,mb,deg_north,deg_east, ,kt,mb,deg_north,deg_east, ,kt,mb,deg_north,deg_east, ,kt,mb,deg_north,deg_east, ,kt,mb,deg_north,deg_east, ,kt,mb,deg_north,deg_east, ,kt,mb,deg_north,deg_east, ,kt,mb,deg_north,deg_east, ,kt,mb,deg_north,deg_east, ,kt,mb,deg_north,deg_east, ,kt,mb,deg_north,deg_east, ,kt,mb,nmile,nmile,nmile,nmile,nmile,nmile,nmile,nmile,nmile,nmile,nmile,nmile,nmile,nmile,mb,nmile,nmile,nmile,nmile,nmile,nmile,nmile,nmile,nmile,nmile,nmile,nmile,nmile,nmile,Quad,nmile,nmile,Quad,nmile,nmile,nmile,mb,nmile,nmile,nmile,nmile,nmile,nmile,nmile,nmile,nmile,nmile,nmile,nmile,nmile,nmile
1970143N19091,1970,02, NI, BB,02B,1970-05-22 18:00:00, TS,-999.,-999.,-999.,-999.,N/A,-999.,-999.,main, 19.30, 90.70,NI,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0, 19.3, 90.7,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0, 19.3, 90.7,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,0.00000,0.00000,0.00000,0.00000,-1.00000,-1.00000,-1.00000,-1.00000,-1.00000,-1.00000,-1.00000,-1.00000,-1.00000,-1.00000,-1.00000,-1.00000
1970143N19091,1970,02, NI, BB,02B,1970-05-23 00:00:00, TS,-999.,-999.,-999.,-999.,N/A,-999.,-999.,main, 19.50, 90.90,NI,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0, 19.5, 90.9,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0, 19.5, 90.9,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.0,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,-999.000,0.00000,0.00000,0.00000,0.00000,-1.00000,-1.00000,-1.00000,-1.00000,-1.00000,-1.00000,-1.00000,-1.00000,-1.00000,-1.00000,-1.00000,-1.00000
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