Update pinned environments

Update Conda environment and Pip requirements specs for current packages.
sanderslab · Sep 21, 2020 · 56f5215 · 56f5215
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commit 56f5215
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diff --git a/environment_lin.yml b/environment_lin.yml
@@ -3,140 +3,191 @@ channels:
   - defaults
 dependencies:
   - _libgcc_mutex=0.1=conda_forge
-  - _openmp_mutex=4.5=0_gnu
+  - _openmp_mutex=4.5=1_gnu
+  - aiocontextvars=0.2.2=py_0
   - apptools=4.5.0=py_0
-  - awscli=1.17.14=py36_0
-  - boto3=1.11.14=py_0
-  - botocore=1.14.14=py_0
-  - bzip2=1.0.8=h516909a_2
-  - ca-certificates=2019.11.28=hecc5488_0
-  - certifi=2019.11.28=py36_0
-  - cffi=1.13.2=py36h8022711_0
-  - cloudpickle=1.2.2=py_1
+  - awscli=1.18.142=py36h9f0ad1d_0
+  - blosc=1.20.1=he1b5a44_0
+  - boto3=1.15.1=pyh9f0ad1d_0
+  - botocore=1.18.1=pyh9f0ad1d_0
+  - brotli=1.0.9=he1b5a44_0
+  - brotlipy=0.7.0=py36h8c4c3a4_1000
+  - brunsli=0.1=he1b5a44_0
+  - bzip2=1.0.8=h516909a_3
+  - c-ares=1.16.1=h516909a_3
+  - ca-certificates=2020.6.20=hecda079_0
+  - certifi=2020.6.20=py36h9f0ad1d_0
+  - cffi=1.14.3=py36h0ff685e_0
+  - charls=2.1.0=he1b5a44_2
+  - cloudpickle=1.6.0=py_0
   - colorama=0.4.3=py_0
   - configobj=5.0.6=py_0
-  - cryptography=2.8=py36h72c5cf5_1
-  - curl=7.68.0=hf8cf82a_0
+  - contextvars=2.4=py_0
+  - cryptography=3.1=py36h45558ae_0
+  - curl=7.71.1=he644dc0_6
   - cycler=0.10.0=py_2
-  - cython=0.29.15=py36he1b5a44_0
+  - cython=0.29.21=py36h831f99a_0
   - cytoolz=0.10.1=py36h516909a_0
-  - dask-core=2.10.1=py_0
+  - dask-core=2.27.0=py_0
   - dbus=1.13.6=he372182_0
-  - decorator=4.4.1=py_0
+  - decorator=4.4.2=py_0
   - docutils=0.15.2=py36_0
-  - envisage=4.8.0=py_0
+  - double-conversion=3.1.5=he1b5a44_2
+  - eigen=3.3.7=hc9558a2_1001
+  - envisage=4.9.2=py_0
   - et_xmlfile=1.0.1=py_1001
   - expat=2.2.9=he1b5a44_2
-  - fontconfig=2.13.1=h86ecdb6_1001
-  - freetype=2.10.0=he983fc9_1
-  - future=0.18.2=py36_0
+  - ffmpeg=4.3.1=h167e202_0
+  - fontconfig=2.13.1=h1056068_1002
+  - freetype=2.10.2=he06d7ca_0
   - gettext=0.19.8.1=hc5be6a0_1002
-  - glib=2.58.3=py36h6f030ca_1002
-  - gst-plugins-base=1.14.5=h0935bb2_1
-  - gstreamer=1.14.5=h36ae1b5_1
+  - giflib=5.2.1=h516909a_2
+  - gl2ps=1.4.2=he06d7ca_0
+  - glew=2.1.0=he1b5a44_0
+  - glib=2.66.0=h0dae87d_0
+  - gmp=6.2.0=he1b5a44_2
+  - gnutls=3.6.13=h79a8f9a_0
+  - gst-plugins-base=1.14.5=h0935bb2_2
+  - gstreamer=1.14.5=h36ae1b5_2
   - hdf4=4.2.13=hf30be14_1003
-  - hdf5=1.10.5=nompi_h3c11f04_1104
-  - icu=64.2=he1b5a44_1
-  - idna=2.8=py36_1000
-  - imageio=2.6.1=py36_0
+  - hdf5=1.10.6=nompi_h3c11f04_101
+  - icu=67.1=he1b5a44_0
+  - idna=2.10=pyh9f0ad1d_0
+  - imagecodecs=2020.5.30=py36hc75b63b_2
+  - imageio=2.9.0=py_0
+  - immutables=0.14=py36h8c4c3a4_0
   - jdcal=1.4.1=py_0
-  - jmespath=0.9.4=py_0
-  - joblib=0.14.1=py_0
-  - jpeg=9c=h14c3975_1001
+  - jmespath=0.10.0=pyh9f0ad1d_0
+  - joblib=0.16.0=py_0
+  - jpeg=9d=h516909a_0
   - jsoncpp=1.8.4=hc9558a2_1002
-  - kiwisolver=1.1.0=py36hc9558a2_0
-  - krb5=1.16.4=h2fd8d38_0
-  - libblas=3.8.0=14_openblas
-  - libcblas=3.8.0=14_openblas
-  - libclang=9.0.1=default_hde54327_0
-  - libcurl=7.68.0=hda55be3_0
-  - libedit=3.1.20170329=hf8c457e_1001
-  - libffi=3.2.1=he1b5a44_1006
-  - libgcc-ng=9.2.0=h24d8f2e_2
-  - libgfortran-ng=7.3.0=hdf63c60_5
-  - libgomp=9.2.0=h24d8f2e_2
-  - libiconv=1.15=h516909a_1005
-  - liblapack=3.8.0=14_openblas
-  - libllvm9=9.0.1=hc9558a2_0
-  - libnetcdf=4.7.3=nompi_h9f9fd6a_101
-  - libopenblas=0.3.7=h5ec1e0e_6
-  - libpng=1.6.37=hed695b0_0
-  - libssh2=1.8.2=h22169c7_2
-  - libstdcxx-ng=9.2.0=hdf63c60_2
-  - libtiff=4.1.0=hc3755c2_3
+  - jxrlib=1.1=h516909a_2
+  - kiwisolver=1.2.0=py36hdb11119_0
+  - krb5=1.17.1=hfafb76e_3
+  - lame=3.100=h14c3975_1001
+  - lcms2=2.11=hbd6801e_0
+  - ld_impl_linux-64=2.35=h769bd43_9
+  - lerc=2.2=he1b5a44_0
+  - libaec=1.0.4=he1b5a44_1
+  - libblas=3.8.0=17_openblas
+  - libcblas=3.8.0=17_openblas
+  - libclang=10.0.1=default_hde54327_1
+  - libcurl=7.71.1=hcdd3856_6
+  - libedit=3.1.20191231=he28a2e2_2
+  - libev=4.33=h516909a_1
+  - libevent=2.1.10=hcdb4288_2
+  - libffi=3.2.1=he1b5a44_1007
+  - libgcc-ng=9.3.0=h24d8f2e_16
+  - libgfortran-ng=7.5.0=hdf63c60_16
+  - libglu=9.0.0=he1b5a44_1001
+  - libgomp=9.3.0=h24d8f2e_16
+  - libiconv=1.16=h516909a_0
+  - liblapack=3.8.0=17_openblas
+  - libllvm10=10.0.1=he513fc3_3
+  - libnetcdf=4.7.4=nompi_h84807e1_105
+  - libnghttp2=1.41.0=h8cfc5f6_2
+  - libogg=1.3.2=h516909a_1002
+  - libopenblas=0.3.10=pthreads_hb3c22a3_4
+  - libpng=1.6.37=hed695b0_2
+  - libpq=12.3=h5513abc_0
+  - libssh2=1.9.0=hab1572f_5
+  - libstdcxx-ng=9.3.0=hdf63c60_16
+  - libtheora=1.1.1=h516909a_1003
+  - libtiff=4.1.0=hc7e4089_6
   - libuuid=2.32.1=h14c3975_1000
+  - libvorbis=1.3.7=he1b5a44_0
+  - libwebp-base=1.1.0=h516909a_3
   - libxcb=1.13=h14c3975_1002
   - libxkbcommon=0.10.0=he1b5a44_0
-  - libxml2=2.9.10=hee79883_0
-  - lz4-c=1.8.3=he1b5a44_1001
-  - matplotlib=3.1.3=py36_0
-  - matplotlib-base=3.1.3=py36h250f245_0
-  - mayavi=4.7.1=py36h7eb8c7e_2
-  - ncurses=6.1=hf484d3e_1002
-  - networkx=2.4=py_0
-  - nspr=4.25=he1b5a44_0
-  - nss=3.47=he751ad9_0
-  - numpy=1.18.1=py36h95a1406_0
+  - libxml2=2.9.10=h68273f3_2
+  - libzopfli=1.0.3=he1b5a44_0
+  - loguru=0.5.0=py36h9f0ad1d_0
+  - lz4-c=1.9.2=he1b5a44_3
+  - matplotlib=3.2.2=1
+  - matplotlib-base=3.2.2=py36h5fdd944_1
+  - mayavi=4.7.2=py36he85dd81_2
+  - mysql-common=8.0.21=2
+  - mysql-libs=8.0.21=hf3661c5_2
+  - ncurses=6.2=he1b5a44_1
+  - nettle=3.4.1=h1bed415_1002
+  - networkx=2.5=py_0
+  - nspr=4.28=he1b5a44_0
+  - nss=3.57=he751ad9_0
+  - numpy=1.19.1=py36h3849536_2
   - olefile=0.46=py_0
-  - openjdk=8.0.192=h516909a_1004
-  - openpyxl=3.0.3=py_0
-  - openssl=1.1.1d=h516909a_0
-  - pandas=1.0.1=py36hb3f55d8_0
-  - pcre=8.43=he1b5a44_0
-  - pillow=7.0.0=py36hefe7db6_0
-  - pip=20.0.2=py_2
+  - openh264=2.1.1=h8b12597_0
+  - openjdk=8.0.265=h516909a_0
+  - openjpeg=2.3.1=h981e76c_3
+  - openpyxl=3.0.5=py_0
+  - openssl=1.1.1g=h516909a_1
+  - pandas=1.1.2=py36h831f99a_0
+  - pcre=8.44=he1b5a44_0
+  - pillow=7.2.0=py36h8328e55_1
+  - pip=20.2.3=py_0
+  - proj=7.0.0=h966b41f_5
   - pthread-stubs=0.4=h14c3975_1001
-  - pyamg=4.0.0=py36h9de70de_1001
+  - pugixml=1.10=he1b5a44_1
+  - pyamg=4.0.0=py36h6957fcd_1002
   - pyasn1=0.4.8=py_0
-  - pycparser=2.19=py36_1
-  - pyface=6.1.2=py_0
-  - pygments=2.5.2=py_0
-  - pyopenssl=19.1.0=py36_0
-  - pyparsing=2.4.6=py_0
-  - pysocks=1.7.1=py36_0
-  - python=3.6.7=h357f687_1006
+  - pycparser=2.20=pyh9f0ad1d_2
+  - pyface=7.0.0=pyh9f0ad1d_1
+  - pygments=2.7.1=py_0
+  - pyopenssl=19.1.0=py_1
+  - pyparsing=2.4.7=pyh9f0ad1d_0
+  - pyqt=5.12.3=py36haa643ae_3
+  - pysocks=1.7.1=py36h9f0ad1d_1
+  - python=3.6.11=h4d41432_2_cpython
   - python-dateutil=2.8.1=py_0
-  - pytz=2019.3=py_0
-  - pywavelets=1.1.1=py36hc1659b7_0
-  - pyyaml=5.2=py36h516909a_0
-  - qt=5.12.5=hd8c4c69_1
-  - readline=8.0=hf8c457e_0
-  - rsa=3.4.2=py_1
-  - s3transfer=0.3.3=py36_0
-  - scikit-image=0.16.2=py36hb3f55d8_0
-  - scikit-learn=0.22.1=py36hcdab131_1
-  - scipy=1.4.1=py36h921218d_0
-  - setuptools=45.2.0=py36_0
-  - six=1.14.0=py36_0
-  - sqlite=3.30.1=hcee41ef_0
-  - tbb=2019.9=hc9558a2_1
+  - python_abi=3.6=1_cp36m
+  - pytz=2020.1=pyh9f0ad1d_0
+  - pywavelets=1.1.1=py36h68bb277_2
+  - pyyaml=5.3.1=py36h8c4c3a4_0
+  - qt=5.12.9=h1f2b2cb_0
+  - readline=8.0=he28a2e2_2
+  - rsa=4.4.1=pyh9f0ad1d_0
+  - s3transfer=0.3.3=py36h9f0ad1d_1
+  - scikit-image=0.17.2=py36h7c3b610_2
+  - scikit-learn=0.23.2=py36hfb379a7_0
+  - scipy=1.5.2=py36h3a855aa_0
+  - setuptools=49.6.0=py36h9f0ad1d_1
+  - six=1.15.0=pyh9f0ad1d_0
+  - snappy=1.1.8=he1b5a44_3
+  - sqlite=3.33.0=h4cf870e_0
+  - tbb=2020.2=hc9558a2_0
+  - tbb-devel=2020.2=hc9558a2_0
+  - threadpoolctl=2.1.0=pyh5ca1d4c_0
+  - tifffile=2020.7.4=py_0
   - tk=8.6.10=hed695b0_0
   - toolz=0.10.0=py_0
-  - tornado=6.0.3=py36h516909a_3
-  - traits=5.2.0=py36h516909a_0
-  - traitsui=6.1.3=py_0
-  - urllib3=1.25.7=py36_0
-  - vtk=8.2.0=py36h9286700_207
-  - wheel=0.34.2=py_1
+  - tornado=6.0.4=py36h8c4c3a4_1
+  - traits=6.1.0=py36h8c4c3a4_0
+  - traitsui=7.0.1=pyh9f0ad1d_0
+  - urllib3=1.25.10=py_0
+  - utfcpp=3.1.1=0
+  - vtk=9.0.1=no_osmesa_py36h77cafce_100
+  - wheel=0.35.1=pyh9f0ad1d_0
+  - x264=1!152.20180806=h14c3975_0
   - xorg-kbproto=1.0.7=h14c3975_1002
   - xorg-libice=1.0.10=h516909a_0
   - xorg-libsm=1.2.3=h84519dc_1000
-  - xorg-libx11=1.6.9=h516909a_0
+  - xorg-libx11=1.6.12=h516909a_0
   - xorg-libxau=1.0.9=h14c3975_0
   - xorg-libxdmcp=1.1.3=h516909a_0
+  - xorg-libxext=1.3.4=h516909a_0
   - xorg-libxt=1.2.0=h516909a_0
+  - xorg-xextproto=7.3.0=h14c3975_1002
   - xorg-xproto=7.0.31=h14c3975_1007
-  - xz=5.2.4=h14c3975_1001
-  - yaml=0.2.2=h516909a_1
-  - zlib=1.2.11=h516909a_1006
-  - zstd=1.4.4=h3b9ef0a_1
+  - xz=5.2.5=h516909a_1
+  - yaml=0.2.5=h516909a_0
+  - zfp=0.5.5=he1b5a44_1
+  - zlib=1.2.11=h516909a_1009
+  - zstd=1.4.5=h6597ccf_2
   - pip:
     - --extra-index-url https://pypi.fury.io/dd8/
-    - javabridge==1.0.18.post16+gc7ccaed
-    - matplotlib-scalebar==0.6.1
-    - pyqt5==5.14.1
-    - pyqt5-sip==12.7.1
+    - javabridge==1.0.18.post21+g4526f53
+    - matplotlib-scalebar==0.6.2
+    - pyqt5-sip==4.19.18
+    - pyqtchart==5.12
     - pyqtwebengine==5.12.1
     - python-bioformats==1.1.0
     - simpleitk==1.2.0rc2.dev1162+g2a79d
-