For release #70
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For release #70
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Co-authored-by: Matthieu Muffato <[email protected]>
Co-authored-by: Matthieu Muffato <[email protected]>
Co-authored-by: Matthieu Muffato <[email protected]>
Co-authored-by: Matthieu Muffato <[email protected]>
Co-authored-by: Matthieu Muffato <[email protected]>
Co-authored-by: Matthieu Muffato <[email protected]>
Co-authored-by: Matthieu Muffato <[email protected]>
Count busco genes
|
alxndrdiaz
reviewed
May 17, 2023
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@priyanka-surana Just found out that MultiQC throws an error while running the small test (not sure if you get the same error as well):
Command error:
##### Flat plots will instead be plotted as interactive #####
| custom_content | sanger-tol-blobtoolkit-methods-description: Found 1 sample (html)
| custom_content | software_versions: Found 1 sample (html)
| custom_content | sanger-tol-blobtoolkit-summary: Found 1 sample (html)
| mosdepth | Found 4 reports
╭──────────────── Oops! The 'mosdepth' MultiQC module broke... ────────────────╮
│ Please copy this log and report it at │
│ https://github.com/ewels/MultiQC/issues │
│ Please attach a file that triggers the error. The last file found was: │
│ ./5/mMelMel3_T1.mosdepth.region.dist.txt │
│ │
│ Traceback (most recent call last): │
│ File "/usr/local/lib/python3.11/site-packages/multiqc/plots/linegraph.py", │
│ return get_template_mod().linegraph(plotdata, pconfig) │
│ ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ │
│ AttributeError: module 'multiqc.templates.default' has no attribute 'linegra │
│ │
│ During handling of the above exception, another exception occurred: │
│ │
│ Traceback (most recent call last): │
│ File "/usr/local/lib/python3.11/site-packages/multiqc/multiqc.py", line 65 │
│ output = mod() │
│ ^^^^^ │
│ File "/usr/local/lib/python3.11/site-packages/multiqc/modules/mosdepth/mos │
│ plot=linegraph.plot( │
│ ^^^^^^^^^^^^^^^ │
│ File "/usr/local/lib/python3.11/site-packages/multiqc/plots/linegraph.py", │
│ matplotlib_linegraph(plotdata, pconfig) │
│ File "/usr/local/lib/python3.11/site-packages/multiqc/plots/linegraph.py", │
│ fig = plt.figure(figsize=(14, plt_height), frameon=False) │
│ ^^^ │
│ NameError: name 'plt' is not defined │
│ │
╰──────────────────────────────────────────────────────────────────────────────╯
Unfortunately I am unable to replicate this error. Tried with both Nextflow version 22.x and 23.x. I am guessing this was mostly due to the disk quota error you saw. |
Merged
update images
alxndrdiaz
approved these changes
May 18, 2023
priyanka-surana
commented
May 18, 2023
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