fix CustomMappedBAM

sdparekh · Feb 18, 2018 · de3b1e5 · de3b1e5
1 parent f6364e1
commit de3b1e5
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/zUMIs-master.sh b/zUMIs-master.sh
@@ -135,7 +135,7 @@ while getopts ":R:S:f:r:g:o:a:t:s:c:m:l:b:n:N:q:Q:z:u:x:e:p:i:d:X:A:w:j:F:C:y:Y:
   case $options in
   R ) isslurm=$OPTARG;;
   S ) isStats=$OPTARG;;
-  X ) isCustomFASTQ=$OPTARG;;
+  X ) CustomMappedBAM=$OPTARG;;
   A ) isCustomFASTQ=$OPTARG;;
   w ) whichStage=$OPTARG;;
   f ) bcread=$OPTARG;;