[binary] output file name change for outside parameters (#14)

sunilmut · Feb 18, 2024 · 49b54e6 · 49b54e6
1 parent 10bd8f5
commit 49b54e6
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Showing 62 changed files with 4 additions and 11 deletions.
diff --git a/binary.py b/binary.py
@@ -45,7 +45,7 @@
 EMPTY = "_EMPTY"
 
 # output file name formats:
-OUTPUT_NO_PARAMETERS = "_Not"
+OUTPUT_NO_PARAMETERS = "_outside-parameters"
 OUTPUT_ZERO_TO_ONE_CSV_NAME = "01"
 OUTPUT_ONE_TO_ZERO_CSV_NAME = "10"
 OUTPUT_LOG_FILE = "binary_output.log"
@@ -249,7 +249,6 @@ def format_out_nop_file_name(
         + UNDERSCORE
         + OUTPUT_ZERO_TO_ONE_CSV_NAME
         + output_no_parameter
-        + param_names
         + common.CSV_EXT,
     )
     min_time_before_after = format_out_name_with_param_val(
@@ -264,7 +263,6 @@ def format_out_nop_file_name(
             + input_file_without_ext
             + min_time_before_after
             + output_no_parameter
-            + param_names
             + common.CSV_EXT,
         )
     else:
@@ -273,7 +271,6 @@ def format_out_nop_file_name(
             OUTPUT_ZERO_TO_ONE_CSV_NAME
             + min_time_before_after
             + output_no_parameter
-            + param_names
             + common.CSV_EXT,
         )
 
@@ -283,7 +280,6 @@ def format_out_nop_file_name(
         + UNDERSCORE
         + OUTPUT_ONE_TO_ZERO_CSV_NAME
         + output_no_parameter
-        + param_names
         + common.CSV_EXT,
     )
 
@@ -295,7 +291,6 @@ def format_out_nop_file_name(
             + input_file_without_ext
             + min_time_before_after
             + output_no_parameter
-            + param_names
             + common.CSV_EXT,
         )
     else:
@@ -304,7 +299,6 @@ def format_out_nop_file_name(
             OUTPUT_ONE_TO_ZERO_CSV_NAME
             + min_time_before_after
             + output_no_parameter
-            + param_names
             + common.CSV_EXT,
         )
 

diff --git a/dff.py b/dff.py
@@ -1,9 +1,12 @@
+import concurrent
 import getopt
 import glob
 import logging
 import os
 import subprocess
 import sys
+import time
+from concurrent.futures import ProcessPoolExecutor
 
 import h5py
 import numpy as np
@@ -23,9 +26,6 @@
 
 import common
 from parameter import *
-import concurrent
-from concurrent.futures import ProcessPoolExecutor
-import time
 
 # UI related constants
 INPUT_FOLDER_NAME_BOX_MAX_WIDTH = 26
@@ -59,7 +59,6 @@
 OUTPUT_ZEROS = "0_"
 OUTPUT_ONES = "1_"
 OUTPUT_DFF = "dff_"
-OUTPUT_NOT = "_Not"
 OUTPUT_AUC = "AUC (sum)"
 OUTPUT_Z_SCORE = "dff (avg)"
 OUTPUT_SUMMARY_COLUMN_SCHEMA = {

diff --git a/...FP_c1t2- Index/01_1-0s_Not_CSm_CSplus.csv → ...1t2- Index/01_1-0s_outside-parameters.csv b/...FP_c1t2- Index/01_1-0s_Not_CSm_CSplus.csv → ...1t2- Index/01_1-0s_outside-parameters.csv
diff --git a/...2_F-YFP_c1t2- Index_01_Not_CSm_CSplus.csv → ...YFP_c1t2- Index_01_outside-parameters.csv b/...2_F-YFP_c1t2- Index_01_Not_CSm_CSplus.csv → ...YFP_c1t2- Index_01_outside-parameters.csv
diff --git a/...2_F-YFP_c1t2- Index_10_Not_CSm_CSplus.csv → ...YFP_c1t2- Index_10_outside-parameters.csv b/...2_F-YFP_c1t2- Index_10_Not_CSm_CSplus.csv → ...YFP_c1t2- Index_10_outside-parameters.csv
diff --git a/...FP_c1t2- Index/10_1-0s_Not_CSm_CSplus.csv → ...1t2- Index/10_1-0s_outside-parameters.csv b/...FP_c1t2- Index/10_1-0s_Not_CSm_CSplus.csv → ...1t2- Index/10_1-0s_outside-parameters.csv
diff --git a/...FP_c1t3- Index/01_1-0s_Not_CSm_CSplus.csv → ...1t3- Index/01_1-0s_outside-parameters.csv b/...FP_c1t3- Index/01_1-0s_Not_CSm_CSplus.csv → ...1t3- Index/01_1-0s_outside-parameters.csv
diff --git a/...2_F-YFP_c1t3- Index_01_Not_CSm_CSplus.csv → ...YFP_c1t3- Index_01_outside-parameters.csv b/...2_F-YFP_c1t3- Index_01_Not_CSm_CSplus.csv → ...YFP_c1t3- Index_01_outside-parameters.csv
diff --git a/...2_F-YFP_c1t3- Index_10_Not_CSm_CSplus.csv → ...YFP_c1t3- Index_10_outside-parameters.csv b/...2_F-YFP_c1t3- Index_10_Not_CSm_CSplus.csv → ...YFP_c1t3- Index_10_outside-parameters.csv
diff --git a/...FP_c1t3- Index/10_1-0s_Not_CSm_CSplus.csv → ...1t3- Index/10_1-0s_outside-parameters.csv b/...FP_c1t3- Index/10_1-0s_Not_CSm_CSplus.csv → ...1t3- Index/10_1-0s_outside-parameters.csv
diff --git a/..._F_c1t1- Index/01_1-0s_Not_CSm_CSplus.csv → ...1t1- Index/01_1-0s_outside-parameters.csv b/..._F_c1t1- Index/01_1-0s_Not_CSm_CSplus.csv → ...1t1- Index/01_1-0s_outside-parameters.csv
diff --git a/...806d2_F_c1t1- Index_01_Not_CSm_CSplus.csv → ...2_F_c1t1- Index_01_outside-parameters.csv b/...806d2_F_c1t1- Index_01_Not_CSm_CSplus.csv → ...2_F_c1t1- Index_01_outside-parameters.csv
diff --git a/...806d2_F_c1t1- Index_10_Not_CSm_CSplus.csv → ...2_F_c1t1- Index_10_outside-parameters.csv b/...806d2_F_c1t1- Index_10_Not_CSm_CSplus.csv → ...2_F_c1t1- Index_10_outside-parameters.csv
diff --git a/..._F_c1t1- Index/10_1-0s_Not_CSm_CSplus.csv → ...1t1- Index/10_1-0s_outside-parameters.csv b/..._F_c1t1- Index/10_1-0s_Not_CSm_CSplus.csv → ...1t1- Index/10_1-0s_outside-parameters.csv
diff --git a/...Fm_c2t1- Index/01_1-0s_Not_CSm_CSplus.csv → ...2t1- Index/01_1-0s_outside-parameters.csv b/...Fm_c2t1- Index/01_1-0s_Not_CSm_CSplus.csv → ...2t1- Index/01_1-0s_outside-parameters.csv
diff --git a/...06d2_Fm_c2t1- Index_01_Not_CSm_CSplus.csv → ..._Fm_c2t1- Index_01_outside-parameters.csv b/...06d2_Fm_c2t1- Index_01_Not_CSm_CSplus.csv → ..._Fm_c2t1- Index_01_outside-parameters.csv
diff --git a/...06d2_Fm_c2t1- Index_10_Not_CSm_CSplus.csv → ..._Fm_c2t1- Index_10_outside-parameters.csv b/...06d2_Fm_c2t1- Index_10_Not_CSm_CSplus.csv → ..._Fm_c2t1- Index_10_outside-parameters.csv
diff --git a/...Fm_c2t1- Index/10_1-0s_Not_CSm_CSplus.csv → ...2t1- Index/10_1-0s_outside-parameters.csv b/...Fm_c2t1- Index/10_1-0s_Not_CSm_CSplus.csv → ...2t1- Index/10_1-0s_outside-parameters.csv
diff --git a/...Fm_c2t2- Index/01_1-0s_Not_CSm_CSplus.csv → ...2t2- Index/01_1-0s_outside-parameters.csv b/...Fm_c2t2- Index/01_1-0s_Not_CSm_CSplus.csv → ...2t2- Index/01_1-0s_outside-parameters.csv
diff --git a/...06d2_Fm_c2t2- Index_01_Not_CSm_CSplus.csv → ..._Fm_c2t2- Index_01_outside-parameters.csv b/...06d2_Fm_c2t2- Index_01_Not_CSm_CSplus.csv → ..._Fm_c2t2- Index_01_outside-parameters.csv
diff --git a/...06d2_Fm_c2t2- Index_10_Not_CSm_CSplus.csv → ..._Fm_c2t2- Index_10_outside-parameters.csv b/...06d2_Fm_c2t2- Index_10_Not_CSm_CSplus.csv → ..._Fm_c2t2- Index_10_outside-parameters.csv
diff --git a/...Fm_c2t2- Index/10_1-0s_Not_CSm_CSplus.csv → ...2t2- Index/10_1-0s_outside-parameters.csv b/...Fm_c2t2- Index/10_1-0s_Not_CSm_CSplus.csv → ...2t2- Index/10_1-0s_outside-parameters.csv
diff --git a/...FP_c3t1- Index/01_1-0s_Not_CSm_CSplus.csv → ...3t1- Index/01_1-0s_outside-parameters.csv b/...FP_c3t1- Index/01_1-0s_Not_CSm_CSplus.csv → ...3t1- Index/01_1-0s_outside-parameters.csv
diff --git a/...2_M-YFP_c3t1- Index_01_Not_CSm_CSplus.csv → ...YFP_c3t1- Index_01_outside-parameters.csv b/...2_M-YFP_c3t1- Index_01_Not_CSm_CSplus.csv → ...YFP_c3t1- Index_01_outside-parameters.csv
diff --git a/...2_M-YFP_c3t1- Index_10_Not_CSm_CSplus.csv → ...YFP_c3t1- Index_10_outside-parameters.csv b/...2_M-YFP_c3t1- Index_10_Not_CSm_CSplus.csv → ...YFP_c3t1- Index_10_outside-parameters.csv
diff --git a/...FP_c3t1- Index/10_1-0s_Not_CSm_CSplus.csv → ...3t1- Index/10_1-0s_outside-parameters.csv b/...FP_c3t1- Index/10_1-0s_Not_CSm_CSplus.csv → ...3t1- Index/10_1-0s_outside-parameters.csv
diff --git a/...FP_c4t3- Index/01_1-0s_Not_CSm_CSplus.csv → ...4t3- Index/01_1-0s_outside-parameters.csv b/...FP_c4t3- Index/01_1-0s_Not_CSm_CSplus.csv → ...4t3- Index/01_1-0s_outside-parameters.csv
diff --git a/...2_M-YFP_c4t3- Index_01_Not_CSm_CSplus.csv → ...YFP_c4t3- Index_01_outside-parameters.csv b/...2_M-YFP_c4t3- Index_01_Not_CSm_CSplus.csv → ...YFP_c4t3- Index_01_outside-parameters.csv
diff --git a/...2_M-YFP_c4t3- Index_10_Not_CSm_CSplus.csv → ...YFP_c4t3- Index_10_outside-parameters.csv b/...2_M-YFP_c4t3- Index_10_Not_CSm_CSplus.csv → ...YFP_c4t3- Index_10_outside-parameters.csv
diff --git a/...FP_c4t3- Index/10_1-0s_Not_CSm_CSplus.csv → ...4t3- Index/10_1-0s_outside-parameters.csv b/...FP_c4t3- Index/10_1-0s_Not_CSm_CSplus.csv → ...4t3- Index/10_1-0s_outside-parameters.csv
diff --git a/...FP_c5t2- Index/01_1-0s_Not_CSm_CSplus.csv → ...5t2- Index/01_1-0s_outside-parameters.csv b/...FP_c5t2- Index/01_1-0s_Not_CSm_CSplus.csv → ...5t2- Index/01_1-0s_outside-parameters.csv
diff --git a/...2_M-YFP_c5t2- Index_01_Not_CSm_CSplus.csv → ...YFP_c5t2- Index_01_outside-parameters.csv b/...2_M-YFP_c5t2- Index_01_Not_CSm_CSplus.csv → ...YFP_c5t2- Index_01_outside-parameters.csv
diff --git a/...2_M-YFP_c5t2- Index_10_Not_CSm_CSplus.csv → ...YFP_c5t2- Index_10_outside-parameters.csv b/...2_M-YFP_c5t2- Index_10_Not_CSm_CSplus.csv → ...YFP_c5t2- Index_10_outside-parameters.csv
diff --git a/...FP_c5t2- Index/10_1-0s_Not_CSm_CSplus.csv → ...5t2- Index/10_1-0s_outside-parameters.csv b/...FP_c5t2- Index/10_1-0s_Not_CSm_CSplus.csv → ...5t2- Index/10_1-0s_outside-parameters.csv
diff --git a/..._M_c3t2- Index/01_1-0s_Not_CSm_CSplus.csv → ...3t2- Index/01_1-0s_outside-parameters.csv b/..._M_c3t2- Index/01_1-0s_Not_CSm_CSplus.csv → ...3t2- Index/01_1-0s_outside-parameters.csv
diff --git a/...806d2_M_c3t2- Index_01_Not_CSm_CSplus.csv → ...2_M_c3t2- Index_01_outside-parameters.csv b/...806d2_M_c3t2- Index_01_Not_CSm_CSplus.csv → ...2_M_c3t2- Index_01_outside-parameters.csv
diff --git a/...806d2_M_c3t2- Index_10_Not_CSm_CSplus.csv → ...2_M_c3t2- Index_10_outside-parameters.csv b/...806d2_M_c3t2- Index_10_Not_CSm_CSplus.csv → ...2_M_c3t2- Index_10_outside-parameters.csv
diff --git a/..._M_c3t2- Index/10_1-0s_Not_CSm_CSplus.csv → ...3t2- Index/10_1-0s_outside-parameters.csv b/..._M_c3t2- Index/10_1-0s_Not_CSm_CSplus.csv → ...3t2- Index/10_1-0s_outside-parameters.csv
diff --git a/..._M_c3t3- Index/01_1-0s_Not_CSm_CSplus.csv → ...3t3- Index/01_1-0s_outside-parameters.csv b/..._M_c3t3- Index/01_1-0s_Not_CSm_CSplus.csv → ...3t3- Index/01_1-0s_outside-parameters.csv
diff --git a/...806d2_M_c3t3- Index_01_Not_CSm_CSplus.csv → ...2_M_c3t3- Index_01_outside-parameters.csv b/...806d2_M_c3t3- Index_01_Not_CSm_CSplus.csv → ...2_M_c3t3- Index_01_outside-parameters.csv
diff --git a/...806d2_M_c3t3- Index_10_Not_CSm_CSplus.csv → ...2_M_c3t3- Index_10_outside-parameters.csv b/...806d2_M_c3t3- Index_10_Not_CSm_CSplus.csv → ...2_M_c3t3- Index_10_outside-parameters.csv
diff --git a/..._M_c3t3- Index/10_1-0s_Not_CSm_CSplus.csv → ...3t3- Index/10_1-0s_outside-parameters.csv b/..._M_c3t3- Index/10_1-0s_Not_CSm_CSplus.csv → ...3t3- Index/10_1-0s_outside-parameters.csv
diff --git a/..._M_c4t1- Index/01_1-0s_Not_CSm_CSplus.csv → ...4t1- Index/01_1-0s_outside-parameters.csv b/..._M_c4t1- Index/01_1-0s_Not_CSm_CSplus.csv → ...4t1- Index/01_1-0s_outside-parameters.csv
diff --git a/...806d2_M_c4t1- Index_01_Not_CSm_CSplus.csv → ...2_M_c4t1- Index_01_outside-parameters.csv b/...806d2_M_c4t1- Index_01_Not_CSm_CSplus.csv → ...2_M_c4t1- Index_01_outside-parameters.csv
diff --git a/...806d2_M_c4t1- Index_10_Not_CSm_CSplus.csv → ...2_M_c4t1- Index_10_outside-parameters.csv b/...806d2_M_c4t1- Index_10_Not_CSm_CSplus.csv → ...2_M_c4t1- Index_10_outside-parameters.csv
diff --git a/..._M_c4t1- Index/10_1-0s_Not_CSm_CSplus.csv → ...4t1- Index/10_1-0s_outside-parameters.csv b/..._M_c4t1- Index/10_1-0s_Not_CSm_CSplus.csv → ...4t1- Index/10_1-0s_outside-parameters.csv
diff --git a/..._M_c4t2- Index/01_1-0s_Not_CSm_CSplus.csv → ...4t2- Index/01_1-0s_outside-parameters.csv b/..._M_c4t2- Index/01_1-0s_Not_CSm_CSplus.csv → ...4t2- Index/01_1-0s_outside-parameters.csv
diff --git a/...806d2_M_c4t2- Index_01_Not_CSm_CSplus.csv → ...2_M_c4t2- Index_01_outside-parameters.csv b/...806d2_M_c4t2- Index_01_Not_CSm_CSplus.csv → ...2_M_c4t2- Index_01_outside-parameters.csv
diff --git a/...806d2_M_c4t2- Index_10_Not_CSm_CSplus.csv → ...2_M_c4t2- Index_10_outside-parameters.csv b/...806d2_M_c4t2- Index_10_Not_CSm_CSplus.csv → ...2_M_c4t2- Index_10_outside-parameters.csv
diff --git a/..._M_c4t2- Index/10_1-0s_Not_CSm_CSplus.csv → ...4t2- Index/10_1-0s_outside-parameters.csv b/..._M_c4t2- Index/10_1-0s_Not_CSm_CSplus.csv → ...4t2- Index/10_1-0s_outside-parameters.csv
diff --git a/..._M_c4t4- Index/01_1-0s_Not_CSm_CSplus.csv → ...4t4- Index/01_1-0s_outside-parameters.csv b/..._M_c4t4- Index/01_1-0s_Not_CSm_CSplus.csv → ...4t4- Index/01_1-0s_outside-parameters.csv
diff --git a/...806d2_M_c4t4- Index_01_Not_CSm_CSplus.csv → ...2_M_c4t4- Index_01_outside-parameters.csv b/...806d2_M_c4t4- Index_01_Not_CSm_CSplus.csv → ...2_M_c4t4- Index_01_outside-parameters.csv
diff --git a/...806d2_M_c4t4- Index_10_Not_CSm_CSplus.csv → ...2_M_c4t4- Index_10_outside-parameters.csv b/...806d2_M_c4t4- Index_10_Not_CSm_CSplus.csv → ...2_M_c4t4- Index_10_outside-parameters.csv
diff --git a/..._M_c4t4- Index/10_1-0s_Not_CSm_CSplus.csv → ...4t4- Index/10_1-0s_outside-parameters.csv b/..._M_c4t4- Index/10_1-0s_Not_CSm_CSplus.csv → ...4t4- Index/10_1-0s_outside-parameters.csv
diff --git a/..._M_c5t1- Index/01_1-0s_Not_CSm_CSplus.csv → ...5t1- Index/01_1-0s_outside-parameters.csv b/..._M_c5t1- Index/01_1-0s_Not_CSm_CSplus.csv → ...5t1- Index/01_1-0s_outside-parameters.csv
diff --git a/...806d2_M_c5t1- Index_01_Not_CSm_CSplus.csv → ...2_M_c5t1- Index_01_outside-parameters.csv b/...806d2_M_c5t1- Index_01_Not_CSm_CSplus.csv → ...2_M_c5t1- Index_01_outside-parameters.csv
diff --git a/...806d2_M_c5t1- Index_10_Not_CSm_CSplus.csv → ...2_M_c5t1- Index_10_outside-parameters.csv b/...806d2_M_c5t1- Index_10_Not_CSm_CSplus.csv → ...2_M_c5t1- Index_10_outside-parameters.csv
diff --git a/..._M_c5t1- Index/10_1-0s_Not_CSm_CSplus.csv → ...5t1- Index/10_1-0s_outside-parameters.csv b/..._M_c5t1- Index/10_1-0s_Not_CSm_CSplus.csv → ...5t1- Index/10_1-0s_outside-parameters.csv
diff --git a/..._M_c5t3- Index/01_1-0s_Not_CSm_CSplus.csv → ...5t3- Index/01_1-0s_outside-parameters.csv b/..._M_c5t3- Index/01_1-0s_Not_CSm_CSplus.csv → ...5t3- Index/01_1-0s_outside-parameters.csv
diff --git a/...806d2_M_c5t3- Index_01_Not_CSm_CSplus.csv → ...2_M_c5t3- Index_01_outside-parameters.csv b/...806d2_M_c5t3- Index_01_Not_CSm_CSplus.csv → ...2_M_c5t3- Index_01_outside-parameters.csv
diff --git a/...806d2_M_c5t3- Index_10_Not_CSm_CSplus.csv → ...2_M_c5t3- Index_10_outside-parameters.csv b/...806d2_M_c5t3- Index_10_Not_CSm_CSplus.csv → ...2_M_c5t3- Index_10_outside-parameters.csv
diff --git a/..._M_c5t3- Index/10_1-0s_Not_CSm_CSplus.csv → ...5t3- Index/10_1-0s_outside-parameters.csv b/..._M_c5t3- Index/10_1-0s_Not_CSm_CSplus.csv → ...5t3- Index/10_1-0s_outside-parameters.csv