Inital imp. of variables being stored in yml files

This intial implimentation is related to issue #112.

Signed-off-by: [email protected] <[email protected]>

AC_tools/generic.py

@@ -1311,3 +1311,4 @@ def add_suffix2all_strs_in_dict(d, PrefixStr='OutputDir/'):
         str += PrefixStr
         d[key] = str
     return d
+

AC_tools/reference_families_for_speciess.yml

@@ -0,0 +1,55 @@
+Cly: Cl
+Cl: Cl
+LOx: O3
+POx: O3
+LOX: O3
+POX: O3
+LIOx: I
+PIOx: I
+PClOx: Cl
+LClOx: Cl
+PClOxI: Cl
+LClOxI: Cl
+PClOxII: Cl
+LClOxII: Cl
+LCI: Cl
+LCII: Cl
+PBrOx: Br
+LBrOx: Br
+Br: Br
+Bry: Br
+I: I
+Iy: I
+IxOy: I
+SO4: S
+NIT: N
+NITD1: N
+NITD2: N
+NITD3: N
+NITD4: N
+NITs: N
+NH4: N
+ISOP: C
+NO: N
+NO2: N
+N2O5: N
+O3: O3
+SO2: S
+ACET: C
+ALD2: C
+DMS: S
+HOI: I
+I2: I
+CH3I: I
+CH3IT: I
+CH2I2: I
+CH2IBr: I
+CH2ICl: I
+CHBr3: Br
+CH2Br2: Br
+CH3Br: Br
+CH2Cl2: Cl
+CHCl3: Cl
+CH3Cl: Cl
+HCl: Cl
+HBr: Br

AC_tools/species_mass.yml

@@ -0,0 +1,226 @@
+ACET: 12.0
+ACTA: 60.0
+AERI: 127.0
+AERI_AVG: 151.0
+ALD2: 12.0
+ALK4: 12.0
+ASOA1: 150.0
+ASOA2: 150.0
+ASOA3: 150.0
+ASOAN: 150.0
+ASOG1: 150.0
+ASOG2: 150.0
+ASOG3: 150.0
+BCPI: 12.0
+BCPO: 12.0
+BENZ: 78.11
+Br: 80.0
+Br2: 160.0
+BrCl: 115.0
+BrNO2: 126.0
+BrNO3: 142.0
+BrO: 96.0
+BrSALA: 80.0
+BrSALC: 80.0
+Bromine: 80.0
+Bry: 80.0
+C: 12.0
+C2H4: 12.0
+C2H5I: 168.0
+C2H6: 12.0
+C3H7I: 170.0
+C3H8: 12.0
+CCl4: 152.0
+CFC11: 137.0
+CFC113: 187.0
+CFC114: 187.0
+CFC115: 187.0
+CFC12: 121.0
+CH2Br2: 174.0
+CH2Cl2: 85.0
+CH2I2: 268.0
+CH2IBr: 221.0
+CH2ICl: 167.0
+CH2O: 30.0
+CH2OO: 46.0
+CH3Br: 95.0
+CH3CCl3: 133.0
+CH3Cl: 50.5
+CH3I: 142.0
+CH3IT: 142.0
+CH4: 16.0
+CHBr3: 253.0
+CHCl3: 119.5
+CO: 28.0
+Chlorine: 35.0
+Cl: 35.0
+Cl2: 71.0
+Cl2O2: 103.0
+ClNO2: 81.5
+ClNO3: 97.5
+ClO: 51.0
+ClOO: 67.5
+Cly: 35.0
+DHDN: 226.0
+DMS: 62.0
+DST1: 29.0
+DST2: 29.0
+DST3: 29.0
+DST4: 29.0
+EOH: 46.07
+ETHLN: 105.0
+GLYC: 60.0
+GLYX: 58.0
+H1211: 165.0
+H1301: 149.0
+H2402: 260.0
+H2O: 18.0
+H2O2: 34.0
+HAC: 74.0
+HBr: 81.0
+HC187: 187.0
+HCFC123: 117.0
+HCFC141b: 117.0
+HCFC142b: 117.0
+HCFC22: 86.0
+HCOOH: 46.0
+HCl: 36.5
+HI: 128.0
+HIO3: 176.0
+HNO2: 47.0
+HNO3: 63.0
+HNO4: 79.0
+HO2: 33.0
+HOBr: 97.0
+HOCl: 52.5
+HOI: 144.0
+HONIT: 215.0
+HPALD: 116.0
+I: 127.0
+I2: 254.0
+I2O: 270.0
+I2O2: 286.0
+I2O3: 302.0
+I2O4: 318.0
+I2O5: 334.0
+IBr: 207.0
+ICl: 162.0
+IEPOX: 118.0
+IEPOXA: 118.0
+IEPOXB: 118.0
+IEPOXD: 118.0
+IMAE: 102.0
+INDIOL: 102.0
+INO: 157.0
+IO: 143.0
+IO3: 175.0
+IONITA: 14.0
+IONO: 173.0
+IONO2: 189.0
+IPMN: 147.0
+ISALA: 127.0
+ISALC: 127.0
+ISN1: 147.0
+ISN1OA: 226.0
+ISN1OG: 226.0
+ISOA1: 150.0
+ISOA2: 150.0
+ISOA3: 150.0
+ISOG1: 150.0
+ISOG2: 150.0
+ISOG3: 150.0
+ISOP: 12.0
+ISOPN: 147.0
+ISOPNB: 147.0
+ISOPND: 147.0
+Iodine: 127.0
+Iy: 127.0
+LIMO: 136.0
+LVOC: 154.0
+LVOCOA: 154.0
+MACR: 70.0
+MACRN: 149.0
+MAP: 76.0
+MEK: 12.0
+MGLY: 72.0
+MMN: 149.0
+MOBA: 114.0
+MONITA: 14.0
+MONITS: 215.0
+MONITU: 215.0
+MP: 48.0
+MPN: 93.0
+MSA: 96.0
+MTPA: 136.0
+MTPO: 136.0
+MVK: 70.0
+MVKN: 149.0
+N: 14.0
+N2O: 44.0
+N2O5: 105.0
+NH3: 17.0
+NH4: 18.0
+NIT: 62.0
+NITD1: 62.0
+NITD2: 62.0
+NITD3: 62.0
+NITD4: 62.0
+NITS: 31.0
+NITs: 62.0
+NO: 30.0
+NO2: 46.0
+NO3: 62.0
+NOx: 14.0
+NOy: 14.0
+NPMN: 147.0
+O3: 48.0
+OCPI: 12.0
+OCPO: 12.0
+OCS: 60.0
+OClO: 67.0
+OH: 17.0
+OIO: 159.0
+PAN: 121.0
+PMN: 147.0
+PPN: 135.0
+PROPNN: 109.0
+PRPE: 12.0
+R4N2: 119.0
+RCHO: 58.0
+RIP: 118.0
+RIPA: 118.0
+RIPB: 118.0
+RIPD: 118.0
+S: 32.0
+SALA: 31.4
+SALC: 31.4
+SO2: 64.0
+SO4: 96.0
+SO4D1: 96.0
+SO4D2: 96.0
+SO4D3: 96.0
+SO4D4: 96.0
+SO4S: 96.0
+SO4s: 96.0
+SOAGX: 58.0
+SOAIE: 118.0
+SOAME: 102.0
+SOAMG: 72.0
+SOAP: 150.0
+SOAS: 150.0
+SOx: 32.0
+SSBr2: 160.0
+Sulfate: 32.0
+TOLU: 92.14
+TSOA0: 150.0
+TSOA1: 150.0
+TSOA2: 150.0
+TSOA3: 150.0
+TSOG0: 150.0
+TSOG1: 150.0
+TSOG2: 150.0
+TSOG3: 150.0
+VOCs: 12.0
+XYLE: 106.16
+pFe: 55.85
+sulfur: 32.0