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Update 0.0.3 #29

Merged
merged 83 commits into from
May 19, 2022
Merged

Update 0.0.3 #29

merged 83 commits into from
May 19, 2022

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skim0119
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Note

Merging 0.0.3 into main. Update mostly includes bugfix, test cases, and documentation.

Feature update

  • Spike cutout visualization
  • PCA+GMM clustering
  • Wavelet decomposition
  • Spike sorting documentation
  • Data and DataManger module
  • Signal to noise utility
  • FFT plotting

skim0119 and others added 30 commits April 24, 2022 14:46
@skim0119
add spike cutout visualization
6b60c32
@skim0119
update detection parameter
670a43e
@skim0119
add spike cutout doc in index
1df61f8
@skim0119
test: update protocol for filter collection
c689687
@skim0119
update FilterCollection test set
128c61c
@skim0119
fix: refactor name for clarity
87fd50e
@skim0119
update: spikestamps statistics test
f3dd964
@skim0119
Merge branch 'update-0.0.3' into patch-vis
52f4a64
@skim0119
update: docstring for fft plot
46d64a2
@skim0119
update: docstring for waveform plot
7db7d37
@skim0119
Merge branch 'patch-vis' of https://github.com/skim0119/MiV-OS into p…
cc69b7f 
…atch-vis
@skim0119
update: doc visualization API
287603e
@armantekinalp
data load documentation added
b7a4b29
@skim0119
fix: mypy
f9528b6
@skim0119
Merge pull request #22 from armantekinalp/doc_data_set
6200edf 
data load documentation added
@skim0119
update: test format
ecce63f
@skim0119
Merge pull request #21 from skim0119/patch-vis
c5e607e 
Patch: visualization module, unittests, docs
@skim0119
fix #23 channel axis in visualization
5ffad13
@skim0119
update: documentation on spike-cutout visualization
c208dcd
@skim0119
update: simple-load continuous data; fix minor bugs
2c0da43
@skim0119
update: doc header order
351f247
@skim0119
update: documentation on single-file readout
ee6588f
@skim0119
update: add PCA+GMM clustering
adebea3
@skim0119
update: doc config
37f4f97
@skim0119
Merge branch 'update-0.0.3' into doc_patch
4293895
@skim0119
add: spike cutout output image
0dd4ff0
@skim0119
initial work: wavelet clustering and classification
1f76917
@skim0119
update wavelet decomposition
7a9ce04
@skim0119
update wavelet classifying guide
c63a56d
@skim0119
Merge branch 'doc_patch' into wip_wavelet
04fac47
skim0119 and others added 23 commits May 15, 2022 09:35
@skim0119
wip: data management page
98c90b7
@skim0119
bump up version
dd92fae
@skim0119
initial: io module test
b83a6f9
@skim0119
initial: visualization module test
82a176b
@skim0119
update: unittest for io
8ace521
@skim0119
add pywavelet dependency
6e7f697
@skim0119
update: resolve mypy
3b54316
@skim0119
update: permission issue for window test
5f03f9a
@skim0119
Merge pull request #27 from skim0119/wip_coverage
0d5e3f3 
Update unittest for IO module
@skim0119
Update README.md
1fb7698
@skim0119
update: signal to noise ratio utility
46438b9
@skim0119
Merge branch 'update-0.0.3' into wip_guide
aa79015
@skim0119
update: path validity for Data module
15e9e37
@skim0119
update: binary load bug fix
61d3588
@skim0119
fix: typo
8adc906
@skim0119
update: fft plot and welch
ee9ef68
@skim0119
update: fix bug for sig2noise ratio
12a9107
@skim0119
bugfix: have issue using quantities with scipy
44c0d87
@skim0119
update: add response plot for ButterBandpass filter
725257e
@skim0119
update: data manager module
4435879
@skim0119
update: DataManager path representation
a401da4
@skim0119
fix: test update, typing
3e0fde7
@skim0119
Merge pull request #28 from skim0119/wip_guide
584eb4f 
Patch: Update on data manger and data modules
@skim0119 skim0119 added documentation Improvements or additions to documentation enhancement New feature or request prio:mid Middle-priority issue labels May 19, 2022
@skim0119 skim0119 added this to the Version 0.1.0 milestone May 19, 2022
@skim0119 skim0119 self-assigned this May 19, 2022
@skim0119 skim0119 merged commit fd75a1f into main May 19, 2022
@skim0119 skim0119 deleted the update-0.0.3 branch May 19, 2022 07:26
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@skim0119 @armantekinalp