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Merge latest release 0.17#37

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aschaffer merged 161 commits intoaschaffer:branch-0.17aschaffer/cugraph:branch-0.17from rapidsai:branch-0.17rapidsai/cugraph:branch-0.17Copy head branch name to clipboardNov 30, 2020

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Commits

Commits on Apr 8, 2020

• Define API for hungarian algorithm

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• switch hungarian to operate off of COO format

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Commits on Apr 13, 2020

• Clean up some documentation per PR review

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Commits on May 27, 2020

• Merge branch 'branch-0.15' into fea_hungarian_algorithm

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Commits on Oct 20, 2020

• dask personalization, fix df query

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Commits on Oct 26, 2020

• test updates for asymmetric graphs

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• changelog

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• raise exception

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Commits on Oct 30, 2020

• flake8

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• Merge branch 'branch-0.17' into fix_bugs

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Commits on Nov 4, 2020

• saving wip

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• Remove DiGraph test

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• Remove DiGraph test

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• saving progress

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• test upgrades

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• typos

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• Update karate_undirected.csv

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• Update and rename asymmetric_directed__tiny.csv to karate-asymmetric.csv

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Commits on Nov 5, 2020

• updating for latest raft changes

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• builds!

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• disabled some outputs and large datasets

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• Added some basic result check

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• updated how weights are created

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Commits on Nov 6, 2020

• small changes

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• katz wrapper

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• computing connected components for validation and added some sparsity scipts

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Commits on Nov 7, 2020

• update sgpu katz wrapper

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Commits on Nov 9, 2020

• adding Hungarian/LAP interface

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• Merge branch 'branch-0.17' into fea_hungarian_algorithm

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• pxd

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• saving progress on bindings

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Commits on Nov 10, 2020

• add test

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• add changelog

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• Merge branch 'branch-0.17' into katz_wrapper

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• Initial working version of cupy COO matrix support for WCC. Includes updates to WCC python tests to use a new parameterized fixture and the benchmarking fixture, as well as a pytest.ini with new ma…

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• flake8 fixes.

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• Moved ensure_cugraph_obj() to utils.

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• C++ compiles and unit tests pass

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• fix build errors

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• fixed conflicts

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• merge branch 0.17

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• update/test hungarian python bindings

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• missed deleting a dense reference

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Commits on Nov 11, 2020

• update changelog

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• fix flake8 and clang-format errors

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• wip

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• Updated SCC tests and algo to accept cupy COO matrices, changed output column name from "vertices" to "vertex" for consistency with other algo return values.

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• adding py file

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• removing old db code

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• changelog

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Commits on Nov 12, 2020

• Explicit Instantiation Declarations (EIDecl) for coo_to_csr*()

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• updated code to support flags without library names

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• saving progress

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• missing files

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Commits on Nov 13, 2020

• fix_github_issues

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• Added CuPy input support for sssp: refactored sssp tests and utils, added input/output conversion calls to sssp, updated docstrings.

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• dropped MPI_CXX_LIBRARIES from linking

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• Merge pull request #1270 from Iroy30/fix_github_issues

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• Updated util to set weights to 1 in COO matrix when edgevals=False.

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• python running

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• python passing!

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• add extra check to make serial Louvain deterministic

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• update changelog

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• fix clang format issues

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• Merge branch 'branch-0.17' into branch-0.17-db

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• Merge pull request #1269 from BradReesWork/branch-0.17-db

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Commits on Nov 14, 2020

• cleanup output

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• include doxygen for fresh builds with ./build.sh

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Commits on Nov 15, 2020

• Added EIDecl/EIDir to graph classes.

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Commits on Nov 16, 2020

• Merge branch 'branch-0.17' into enh_louvain_reproducability

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• update changelog

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• cleanup

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Commits on Nov 17, 2020

• Updated BFS tests with fixtures for testing against cugraph, Nx, and CuPy types, added support for conversion functions for CuPy to BFS.

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• Updated docstring for bfs()

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• Updated docstring for bfs_edges()

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• artificial data test

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• Merge pull request #1272 from jpurviance/build-docs-deps

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• style

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• flake8 fixes, refactorings for clarity (updated arg names, etc.)

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Commits on Nov 18, 2020

• Clean Force Atlas notebook

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• Update section title

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• Update parameters and use cyber dataset

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• Create edge path using cuxfilter call

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• Update description

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• Cyber 500 iterations ouput

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• Generate new output

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• Clean Force Atlas notebook

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• Update documentation

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• Update renumbering in wrapper

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• Update conda env

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• Clang format

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• Rename templates and fix indentation in wrapper

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• Update changelog

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• Fix flake8 error

  hlinsen

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• Clear notebook cell

  hlinsen

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• Added support for CuPy CSR and CSC matrices, refactored tests to eliminate redundant coverage.

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• flake8 fixes.

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• Merge remote-tracking branch 'upstream/branch-0.17' into branch-0.17-cupyinputsupport

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• update to store transposed

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• Initial version and test for cugraph.from_edgelist().

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• update RAFT commit hash

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• add persist so we get consistent src and dst columns

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• Merge branch 'branch-0.17' into enh_louvain_reproducability

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• fix flake8 errors

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Commits on Nov 19, 2020

• adding maxst file

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• adding maximum spanning tree

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• Cmake changes: cuco GIT_TAG, arch handling; louvain splitting.

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• update alpha and beta

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• clang

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• FIX Force local install of conda artifact

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• DOC Update changelog

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• Merge pull request #1260 from Iroy30/katz_wrapper

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• Merge remote-tracking branch 'upstream/branch-0.17' into branch-0.17-cupyinputsupport

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• Added PR 1264 to CHANGELOG.md

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• Merge remote-tracking branch 'upstream/branch-0.17' into branch-0.17-genericfromedgelist

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• Fixed example in docstring, added PR 1274 to CHANGELOG.md

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• disable flaky test

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• Fix some header files. Added --allgpuarch flag to build.sh.

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Commits on Nov 20, 2020

• removed split files (for now), updated CMakeLists.txt.

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• Merge pull request #1264 from rlratzel/branch-0.17-cupyinputsupport

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• Merge pull request #1271 from ChuckHastings/enh_louvain_reproducability

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• Merge branch 'branch-0.17' into fa2-notebook

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• update tests

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• update notebooks

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• flake8:

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• Merge branch 'branch-0.17' into fix_bugs

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• Sync-ed release branch.

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• Merge pull request #1273 from hlinsen/fa2-notebook

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• Merge branch 'branch-0.17' into fea_hungarian_algorithm

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• Merge pull request #1237 from Iroy30/fix_bugs

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• flake8 fix, merge remote-tracking branch 'upstream/branch-0.17' into branch-0.17-genericfromedgelist

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• fix my number_map bug fix :-)

  ChuckHastings

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• Added --allgpuarch flag to libcugraph/build.sh.

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• changelog

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• Merge branch 'branch-0.17' into mst_python

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• Changes for supporting multiple arch.

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• cleanup

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• Merge branch 'mst_python' of github.com:afender/cugraph into mst_python

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• Added set() call in loop which iterates over all GPU arches to set the individual arch flags for Gunrock.

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• PR updates

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• FIXME comment, to be addressed in next check-in.

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Commits on Nov 21, 2020

• Arch fixes due to cuco/static_map.cuh incompatibility with arch < 700.

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• Test arch fixes due to cuco/static_map.cuh incompatibility with arch < 700.

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• Merge pull request #1265 from ChuckHastings/fea_hungarian_algorithm

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Commits on Nov 23, 2020

• Merge pull request #1275 from raydouglass/force-local-artifact-install

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• Addressed review comments on <int64_t, int32_t,...>; FIXME comment; default cnstr in graph.

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• Merge pull request #1267 from aschaffer/enh_ext_compile_time_017

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Commits on Nov 24, 2020

• Merge remote-tracking branch 'upstream/branch-0.17' into branch-0.17-genericfromedgelist, added code and tests for from_adjlist().

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• Merge remote-tracking branch 'upstream/branch-0.17' into branch-0.17-genericfromedgelist

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• Added support for dask_cudf DataFrame to from_edgelist().

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• Merge pull request #1274 from rlratzel/branch-0.17-genericfromedgelist

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• add self loop check variable

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• Update graph.py

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• Merge branch 'branch-0.17' into self_loop_check

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• MST in RAFT

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• Merge branch 'branch-0.17' into mst_python

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• style

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• review suggestions

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• style

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Commits on Nov 30, 2020

• Merge pull request #1276 from afender/mst_python

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• Merge pull request #1279 from Iroy30/self_loop_check

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