DCC 0.4.5 release

We are proud to release version 0.4.5 of DCC as of today.

Improvements:

• #48: CircSkipJunctions does not contain junction orientation

Fixes:

• #25: DCC does not check if annotation file is present during start
• #26: CircCoordinate file gene annotation conatins only "." when run without -ss
• #27: DCC output directory needs to be created before logging starts
• #28: Temporary file names for circRNA counts are wrongly concatenated
• #29: Temporary file problem
• #30: fails if -R is not set
• #31: IndexError: list index out of range
• #32: Cant find 'tmp_unsortedNoChrM'
• #36: BAM error
• #38: Check for sorted BAM files fails if first chromosome has less than 100 mapped reads
• #39: Single End Read run crashes
• #40: Extract the circRNA sequences using the script getcircfasta
• #42: DCC crashes with -fg set and -M unset
• #46: Gene name annotations not included in final results
• #47: Dubious CircSkipJunctions output

Notes:

• The CircSkipJunctions output file now has a fourth default column that includes the strand of the annotation. Also, all non-zero entries have now the following format: 1:9930458-9935491-:2, therefore including the strand information before the read count.