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Dev#354

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kltm merged 39 commits intomastergeneontology/minerva:masterfrom devgeneontology/minerva:devCopy head branch name to clipboardNov 12, 2020

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Commits on Aug 25, 2020

• improvements to measurements for causal relations

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Commits on Aug 27, 2020

• remove attempts at updating import statements for go-cams

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Commits on Aug 28, 2020

• added method and test to clean up existing go-cams

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• added command line access to the gocam cleaner

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• do not add imports to newly created models

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Commits on Aug 30, 2020

• removing dead check for URI in tbox when making a class

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Commits on Aug 31, 2020

• Merge pull request #346 from geneontology/eliminate-imports

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• updates to line up with molecular event

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• Merge pull request #347 from geneontology/eliminate-imports

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Commits on Sep 17, 2020

• set the flag to fail if an extra undefined property is used

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• really this is for pathways2go but doesn't harm anything..

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Commits on Sep 21, 2020

• evidence nodes are go-cam entities

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• nudge travis to try again..

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• Merge pull request #351 from geneontology/shex-CLOSED-impl-bug-fix

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Commits on Oct 1, 2020

• update to model statistics calculation

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Commits on Oct 2, 2020

• Merge pull request #352 from geneontology/speed-up-model-stats

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Commits on Oct 14, 2020

• puts the maven build in 'batch mode'

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Commits on Oct 28, 2020

• test and fix for checking modification state in search result

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• added reset method and test

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• add tests back in - fix bug in search test

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Commits on Oct 29, 2020

• added -p

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• Added a basic robot diff operation to minerva m3batchhandler

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Commits on Oct 30, 2020

• Merge pull request #357 from geneontology/modification-state-handling-ART

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• remove import statements during go-cam database load

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• adding a note..

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Commits on Nov 4, 2020

• updating tests and test ontologies

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• added the diff test into batchmodelhandlertest no need for this one.

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Commits on Nov 5, 2020

• avoiding potential confusion - explictly deleting change history for a model after reset.

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Commits on Nov 6, 2020

• comment

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Commits on Nov 9, 2020

• add shex explanation to pipeline report and more error handling

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Commits on Nov 10, 2020

• trying to speed things up - the go-lego download in there killed travis

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Commits on Nov 11, 2020

• refactor in vain attempt to improve legibility...

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• addresses #268

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• updating test files

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• don't load if not turtle.. quiet logging

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• update log message

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Commits on Nov 12, 2020

• Merge pull request #359 from geneontology/add-shex-explanation-json-to-cli-output

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• fixes #360

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• Merge pull request #361 from geneontology/fix-reasoner-explanation-error

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