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Dev #354

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merged 39 commits into from
Nov 12, 2020
Merged

Dev #354

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b104e56
improvements to measurements for causal relations
goodb Aug 25, 2020
e4df2ef
remove attempts at updating import statements for go-cams
goodb Aug 27, 2020
f4f617b
added method and test to clean up existing go-cams
goodb Aug 28, 2020
5654342
added command line access to the gocam cleaner
goodb Aug 28, 2020
d21b608
do not add imports to newly created models
goodb Aug 28, 2020
037b4e8
removing dead check for URI in tbox when making a class
goodb Aug 30, 2020
f07c40e
Merge pull request #346 from geneontology/eliminate-imports
kltm Aug 31, 2020
aa26fe7
updates to line up with molecular event
goodb Aug 31, 2020
22c205d
Merge pull request #347 from geneontology/eliminate-imports
kltm Aug 31, 2020
979af27
set the flag to fail if an extra undefined property is used
goodb Sep 17, 2020
4eb1552
really this is for pathways2go but doesn't harm anything..
goodb Sep 17, 2020
0299df3
evidence nodes are go-cam entities
goodb Sep 21, 2020
7bd0d6e
nudge travis to try again..
goodb Sep 21, 2020
c9488d4
Merge pull request #351 from geneontology/shex-CLOSED-impl-bug-fix
kltm Sep 21, 2020
3503153
update to model statistics calculation
goodb Oct 1, 2020
731390d
Merge pull request #352 from geneontology/speed-up-model-stats
goodb Oct 2, 2020
cb4fedf
puts the maven build in 'batch mode'
goodb Oct 14, 2020
81fc8ef
test and fix for checking modification state in search result
goodb Oct 28, 2020
a4a5661
added reset method and test
goodb Oct 28, 2020
bacc4d8
add tests back in - fix bug in search test
goodb Oct 28, 2020
dcaaf3e
added -p
goodb Oct 29, 2020
0aa9214
Added a basic robot diff operation to minerva m3batchhandler
goodb Oct 29, 2020
076b8a0
Merge pull request #357 from geneontology/modification-state-handling…
kltm Oct 30, 2020
ddf02bc
remove import statements during go-cam database load
goodb Oct 30, 2020
c5a50a6
adding a note..
goodb Oct 30, 2020
7559eaf
updating tests and test ontologies
goodb Nov 4, 2020
37457fa
added the diff test into batchmodelhandlertest no need for this one.
goodb Nov 4, 2020
9ae6519
avoiding potential confusion - explictly deleting change history for …
goodb Nov 5, 2020
d9d8758
comment
goodb Nov 6, 2020
959c370
add shex explanation to pipeline report and more error handling
goodb Nov 9, 2020
8ed8eff
trying to speed things up - the go-lego download in there killed travis
goodb Nov 10, 2020
593f558
refactor in vain attempt to improve legibility...
goodb Nov 11, 2020
5e094c2
addresses #268
goodb Nov 11, 2020
2b50746
updating test files
goodb Nov 11, 2020
3c0e9c8
don't load if not turtle.. quiet logging
goodb Nov 11, 2020
3a3b5ac
update log message
goodb Nov 11, 2020
1b876c4
Merge pull request #359 from geneontology/add-shex-explanation-json-t…
goodb Nov 12, 2020
5e2d790
fixes #360
goodb Nov 12, 2020
319e4ab
Merge pull request #361 from geneontology/fix-reasoner-explanation-error
goodb Nov 12, 2020
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3 changes: 1 addition & 2 deletions build-cli.sh
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Original file line number Diff line number Diff line change
@@ -1,3 +1,2 @@
#!/bin/bash
mvn clean package -am -pl minerva-cli -DskipTests -Dmaven.javadoc.skip=true -Dsource.skip=true

mvn clean package -am -pl minerva-cli -DskipTests -Dmaven.javadoc.skip=true -Dsource.skip=true -B
43 changes: 0 additions & 43 deletions minerva-cli/src/main/java/org/geneontology/minerva/cli/BatchModelUpdater.java
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