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    54 repositories

    • idoc-paper

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Feb 7, 2025Feb 7, 2025

    • idtrackerai

      Public
      Fork of https://gitlab.com/polavieja_lab/idtrackerai
      Python
      •
      GNU General Public License v3.0
      •0•4•0•0•Updated Jan 1, 2025Jan 1, 2025

    • imgstore

      Public
      Store for video frames and metadata. Seekable & scaleable
      Python
      •
      Other
      •4•0•0•1•Updated Dec 19, 2024Dec 19, 2024

    • idoc_docs

      Public
      0•1•0•0•Updated Dec 18, 2024Dec 18, 2024

    • idocr

      Public
      R package to analyze data produced in IDOC
      R
      •
      GNU General Public License v3.0
      •0•0•0•1•Updated Dec 17, 2024Dec 17, 2024

    • idtrackerai-app

      Public
      Fork of https://gitlab.com/polavieja_lab/idtrackerai-app
      Python
      •0•0•0•0•Updated Dec 13, 2024Dec 13, 2024

    • flyhostel

      Public
      Python
      •0•1•0•0•Updated Dec 4, 2024Dec 4, 2024

    • ethoscopy

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •4•0•0•0•Updated Nov 21, 2024Nov 21, 2024

    • ethoscope

      Public
      Python
      •
      GNU General Public License v3.0
      •2•0•0•1•Updated Jul 18, 2024Jul 18, 2024

    • yolov7

      Public
      Implementation of paper - YOLOv7: Trainable bag-of-freebies sets new state-of-the-art for real-time object detectors
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •4.3k•0•0•0•Updated Jul 17, 2024Jul 17, 2024

    • deepethogram

      Public
      Python
      •
      Other
      •33•0•0•0•Updated May 8, 2024May 8, 2024

    • cv2cuda

      Public
      Python
      •0•1•1•0•Updated Apr 2, 2024Apr 2, 2024

    • long-timescale-analysis

      Public
      Jupyter Notebook
      •3•0•0•0•Updated Feb 20, 2024Feb 20, 2024

    • motionmapperpy

      Public
      Modified Python 3.0 implementation of MotionMapper (https://github.com/gordonberman/MotionMapper)
      Python
      •
      Other
      •16•0•0•0•Updated Feb 20, 2024Feb 20, 2024

    • midline-detector

      Public
      Find a midline in a segmented picture
      Python
      •0•0•0•0•Updated Jan 26, 2024Jan 26, 2024

    • Single_Cell_Sleep

      Public
      code related to single cell sleep paper
      Jupyter Notebook
      •1•0•0•0•Updated Jan 5, 2024Jan 5, 2024

    • vidio

      Public
      simple, performant video reading and writing in python
      Python
      •
      MIT License
      •2•0•0•0•Updated Nov 6, 2023Nov 6, 2023

    • sdeconv

      Public
      2D and 3D image deconvolution with python
      Python
      •
      Other
      •5•0•0•0•Updated Aug 27, 2023Aug 27, 2023

    • B-SOID

      Public
      Behavioral segmentation of open field in DeepLabCut, or B-SOID ("B-side"), is a pipeline that pairs unsupervised pattern recognition with supervised classification to achieve fast predictions of behaviors that are not predefined by users.
      Python
      •
      GNU General Public License v3.0
      •57•0•0•0•Updated Jul 26, 2023Jul 26, 2023

    • FlyHostelDocs

      Public
      0•0•0•0•Updated May 3, 2023May 3, 2023

    • pythonvideoannotator

      Public
      Champalimaud Foundation - Python Video Annotator
      Python
      •
      MIT License
      •23•0•0•0•Updated Apr 27, 2023Apr 27, 2023

    • deepethogram_vsc

      Public
      Shell
      •0•0•0•0•Updated Apr 8, 2023Apr 8, 2023

    • pythonvideoannotator-module-idtrackerai

      Public
      IdTrackerAi module for the Python Video Annotator software. http://idtracker.ai
      Python
      •1•0•0•0•Updated Mar 27, 2023Mar 27, 2023

    • pyforms-gui

      Public
      Python
      •16•0•0•0•Updated Mar 21, 2023Mar 21, 2023

    • rjson

      Public
      R
      •12•0•0•0•Updated Mar 17, 2023Mar 17, 2023

    • scopr

      Public
      Read Ethoscope data in R
      R
      •6•0•0•2•Updated Feb 11, 2023Feb 11, 2023

    • SleepML

      Public
      Python
      •0•0•0•0•Updated Feb 6, 2023Feb 6, 2023

    • sleepr

      Public
      Analyse sleep from movement (e.g. in Drosophila)
      R
      •3•0•0•1•Updated Jan 30, 2023Jan 30, 2023

    • fslretho

      Public
      GUI to the Rethomics suite for easy interpretation of ethoscope and DAM datasets
      R
      •
      Other
      •1•0•14•0•Updated Jan 10, 2023Jan 10, 2023

    • trajectorytools

      Public
      A library with some utils to study and plot 2D trajectories developed by members of "de Polavieja lab" (Champalimaud Research, Lisbon, Portugal). Used in the study of animal collective behaviour.
      Python
      •
      GNU General Public License v3.0
      •7•0•0•0•Updated Nov 17, 2022Nov 17, 2022