support for vcr write to disk path (#345)

* #290 - working on integrating vcr handling writing to disk, not done yet related: ropensci/vcr#81 ropensci/webmockr#57 * playing with buoy tests, check back in #FIXME * cpc_prcp test tweaks * man file updates * arc2 fixes, use new write to disk setup * #290 writing to disk work, not done yet * fixes for lcd and isd tests that also cache files * fixed some tests #290 * fix storms test * use relative paths with new vcr version * move write to disk files to inst/ - test check on travis | ropensci/vcr#164 * try commenting out deleting user cached files for ersst tests * comment out one ersst test, does it work now? * try ersst tests each with different file on disk - was previously using the same file perhaps that was leading to failure if e.g. file was opened but not closed before next test ran amybe * remove .Rinstignore, and try inst/test_files in .Rbuildignore if it works on travis * remove inst/test_files from rbuildignore * move test files back to tests/files/ * add .Rinstignore for ignoring test on disk files * woops, needed to fix write_disk_path
ropensci · Mar 23, 2020 · 2a7f09f · 2a7f09f
1 parent 428381d
commit 2a7f09f
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Showing 52 changed files with 17,603 additions and 40 deletions.
diff --git a/.Rinstignore b/.Rinstignore
@@ -0,0 +1,4 @@
+tests/files/.*[.]csv$
+tests/files/.*[.]nc$
+tests/files/.*[.]gz$
+tests/files/.*[.]RT$
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -63,8 +63,9 @@ Suggests:
     purrr,
     ggmap,
     ropenaq,
-    vcr (>= 0.2.2),
+    vcr (>= 0.5.0.92),
     webmockr
+Remotes: ropensci/vcr
 RoxygenNote: 7.1.0
 X-schema.org-applicationCategory: Climate
 X-schema.org-keywords: earth, science, climate, precipitation, temperature, storm, buoy, NCDC, NOAA, tornadoe, sea ice, ISD

diff --git a/R/arc2.R b/R/arc2.R
@@ -33,7 +33,9 @@ arc2_get <- function(year, month, day, cache = TRUE, overwrite = FALSE, ...) {
   key <- file.path(arc2_base_ftp(arc2_base(), date))
   file <- file.path(arc2_cache$cache_path_get(), basename(key))
   if (!file.exists(file)) {
-    suppressMessages(arc2_GET_write(sub("/$", "", key), file, overwrite, ...))
+    res <- suppressMessages(
+      arc2_GET_write(sub("/$", "", key), file, overwrite, ...))
+    file <- res$content
   }
   return(file)
 }

diff --git a/R/buoy.R b/R/buoy.R
@@ -1,3 +1,5 @@
+the_env <- new.env()
+
 #' Get NOAA buoy data from the National Buoy Data Center
 #'
 #' @export
@@ -153,7 +155,8 @@ buoy_single_file_url <- function(dataset, buoyid, file){
 get_ncdf_file <- function(path, buoyid, file, output, ...){
   outpath <- sprintf("%s/%s%s", output, buoyid, file)
   res <- crul::HttpClient$new(path, opts = list(...))$get(disk = outpath)
-  return(outpath)
+  the_env$res <- res
+  return(res$content)
 }
 
 # Download a single ncdf file

diff --git a/R/cpc.R b/R/cpc.R
@@ -71,7 +71,8 @@ cpc_get <- function(year, month, day, us, cache = TRUE, overwrite = FALSE, ...)
   key <- cpc_key(year, month, day, us)
   file <- file.path(cpc_cache$cache_path_get(), basename(key))
   if (!file.exists(file)) {
-    suppressMessages(cpc_GET_write(sub("/$", "", key), file, overwrite, ...))
+    res <- suppressMessages(cpc_GET_write(sub("/$", "", key), file, overwrite, ...))
+    file <- res$content
   }
   return(file)
 }

diff --git a/tests/files/1945_02413099999.csv b/tests/files/1945_02413099999.csv
@@ -0,0 +1,7 @@
+<!DOCTYPE HTML PUBLIC "-//IETF//DTD HTML 2.0//EN">
+<html><head>
+<title>404 Not Found</title>
+</head><body>
+<h1>Not Found</h1>
+<p>The requested URL /data/local-climatological-data/access/1945/02413099999.csv was not found on this server.</p>
+</body></html>
diff --git a/tests/files/201606.nc b/tests/files/201606.nc
diff --git a/tests/files/201609.nc b/tests/files/201609.nc
diff --git a/tests/files/20166.nc b/tests/files/20166.nc
diff --git a/tests/files/20167.nc b/tests/files/20167.nc
diff --git a/tests/files/20168.nc b/tests/files/20168.nc
diff --git a/tests/files/41001c1990.nc b/tests/files/41001c1990.nc
diff --git a/tests/files/46081a2010.nc b/tests/files/46081a2010.nc
diff --git a/tests/files/PRCP_CU_GAUGE_V1.0CONUS_0.25deg.lnx.19980709.gz b/tests/files/PRCP_CU_GAUGE_V1.0CONUS_0.25deg.lnx.19980709.gz
diff --git a/tests/files/PRCP_CU_GAUGE_V1.0CONUS_0.25deg.lnx.20060709.gz b/tests/files/PRCP_CU_GAUGE_V1.0CONUS_0.25deg.lnx.20060709.gz
diff --git a/tests/files/PRCP_CU_GAUGE_V1.0CONUS_0.25deg.lnx.20170115.RT b/tests/files/PRCP_CU_GAUGE_V1.0CONUS_0.25deg.lnx.20170115.RT
diff --git a/tests/files/PRCP_CU_GAUGE_V1.0GLB_0.50deg.lnx.19980709.gz b/tests/files/PRCP_CU_GAUGE_V1.0GLB_0.50deg.lnx.19980709.gz
diff --git a/tests/files/PRCP_CU_GAUGE_V1.0GLB_0.50deg.lnx.20060709RT.gz b/tests/files/PRCP_CU_GAUGE_V1.0GLB_0.50deg.lnx.20060709RT.gz
diff --git a/tests/files/PRCP_CU_GAUGE_V1.0GLB_0.50deg.lnx.20170115.RT b/tests/files/PRCP_CU_GAUGE_V1.0GLB_0.50deg.lnx.20170115.RT
diff --git a/tests/files/Storm.1970143N19091.ibtracs_all.v03r10.csv b/tests/files/Storm.1970143N19091.ibtracs_all.v03r10.csv
@@ -0,0 +1,8 @@
+IBTrACS -- Version: v03r10
+Serial_Num,Season,Num,Basin,Sub_basin,Name,ISO_time,Nature,Latitude,Longitude,Wind(WMO),Pres(WMO),Center,Wind(WMO) Percentile,Pres(WMO) Percentile,Track_type,Latitude_for_mapping,Longitude_for_mapping,Current Basin,hurdat_atl_lat,hurdat_atl_lon,hurdat_atl_grade,hurdat_atl_wind,hurdat_atl_pres,td9636_lat,td9636_lon,td9636_grade,td9636_wind,td9636_pres,reunion_lat,reunion_lon,reunion_grade,reunion_wind,reunion_pres,atcf_lat,atcf_lon,atcf_grade,atcf_wind,atcf_pres,mlc_natl_lat,mlc_natl_lon,mlc_natl_grade,mlc_natl_wind,mlc_natl_pres,ds824_sh_lat,ds824_sh_lon,ds824_sh_grade,ds824_sh_wind,ds824_sh_pres,ds824_ni_lat,ds824_ni_lon,ds824_ni_grade,ds824_ni_wind,ds824_ni_pres,bom_lat,bom_lon,bom_grade,bom_wind,bom_pres,ds824_au_lat,ds824_au_lon,ds824_au_grade,ds824_au_wind,ds824_au_pres,jtwc_sh_lat,jtwc_sh_lon,jtwc_sh_grade,jtwc_sh_wind,jtwc_sh_pres,jtwc_wp_lat,jtwc_wp_lon,jtwc_wp_grade,jtwc_wp_wind,jtwc_wp_pres,td9635_lat,td9635_lon,td9635_grade,td9635_wind,td9635_pres,ds824_wp_lat,ds824_wp_lon,ds824_wp_grade,ds824_wp_wind,ds824_wp_pres,jtwc_io_lat,jtwc_io_lon,jtwc_io_grade,jtwc_io_wind,jtwc_io_pres,cma_lat,cma_lon,cma_grade,cma_wind,cma_pres,hurdat_epa_lat,hurdat_epa_lon,hurdat_epa_grade,hurdat_epa_wind,hurdat_epa_pres,jtwc_ep_lat,jtwc_ep_lon,jtwc_ep_grade,jtwc_ep_wind,jtwc_ep_pres,ds824_ep_lat,ds824_ep_lon,ds824_ep_grade,ds824_ep_wind,ds824_ep_pres,jtwc_cp_lat,jtwc_cp_lon,jtwc_cp_grade,jtwc_cp_wind,jtwc_cp_pres,tokyo_lat,tokyo_lon,tokyo_grade,tokyo_wind,tokyo_pres,neumann_lat,neumann_lon,neumann_grade,neumann_wind,neumann_pres,hko_lat,hko_lon,hko_grade,hko_wind,hko_pres,cphc_lat,cphc_lon,cphc_grade,cphc_wind,cphc_pres,wellington_lat,wellington_lon,wellington_grade,wellington_wind,wellington_pres,newdelhi_lat,newdelhi_lon,newdelhi_grade,newdelhi_wind,newdelhi_pres,nadi_lat,nadi_lon,nadi_grade,nadi_wind,nadi_pres,reunion_rmw,reunion_wind_radii_1_ne,reunion_wind_radii_1_se,reunion_wind_radii_1_sw,reunion_wind_radii_1_nw,reunion_wind_radii_2_ne,reunion_wind_radii_2_se,reunion_wind_radii_2_sw,reunion_wind_radii_2_nw,bom_mn_hurr_xtnt,bom_mn_gale_xtnt,bom_mn_eye_diam,bom_roci,atcf_rmw,atcf_poci,atcf_roci,atcf_eye,atcf_wrad34_rad1,atcf_wrad34_rad2,atcf_wrad34_rad3,atcf_wrad34_rad4,atcf_wrad50_rad1,atcf_wrad50_rad2,atcf_wrad50_rad3,atcf_wrad50_rad4,atcf_wrad64_rad1,atcf_wrad64_rad2,atcf_wrad64_rad3,atcf_wrad64_rad4,tokyo_dir50,tokyo_long50,tokyo_short50,tokyo_dir30,tokyo_long30,tokyo_short30,jtwc_??_rmw,jtwc_??_poci,jtwc_??_roci,jtwc_??_eye,jtwc_??_wrad34_rad1,jtwc_??_wrad34_rad2,jtwc_??_wrad34_rad3,jtwc_??_wrad34_rad4,jtwc_??_wrad50_rad1,jtwc_??_wrad50_rad2,jtwc_??_wrad50_rad3,jtwc_??_wrad50_rad4,jtwc_??_wrad64_rad1,jtwc_??_wrad64_rad2,jtwc_??_wrad64_rad3,jtwc_??_wrad64_rad4
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