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Under win10, sirius can run normally, but after upgrading to Win11, sirius cannot run normally #53

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linkai1208 opened this issue Dec 15, 2021 · 2 comments
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Under win10, sirius can run normally, but after upgrading to Win11, sirius cannot run normally #53

linkai1208 opened this issue Dec 15, 2021 · 2 comments
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@mfleisch
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fixed Win11

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@linkai1208
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Under win10, sirius can run normally, but after upgrading to Win11, sirius cannot run normally.
Can you tell me the reason?
thanks！

INFO 17:29:45 - Sirius Workspace Successfull initialized at: C:\Users\SLG.sirius-4.9
INFO 17:29:45 - You run SIRIUS 4.9.9
INFO 17:29:45 - Sirius was compiled with the following ILP solvers: GLPK-v1.7.0 (included), Gurobi-v9.1.1, CPLEX-v12.7.1, COIN-OR-v1.17.3
INFO 17:29:45 - Treebuilder priorities loaded from 'sirius.properties' are: [GUROBI, CPLEX, CLP, GLPK]
Application Core STATIC Block Error!
java.lang.IllegalStateException: Unmapped relationship: 7
at com.sun.jna.platform.win32.WinNT$SYSTEM_LOGICAL_PROCESSOR_INFORMATION_EX.fromPointer(WinNT.java:3033)
at com.sun.jna.platform.win32.Kernel32Util.getLogicalProcessorInformationEx(Kernel32Util.java:715)
at oshi.driver.windows.LogicalProcessorInformation.getLogicalProcessorInformationEx(LogicalProcessorInformation.java:61)
at oshi.hardware.platform.windows.WindowsCentralProcessor.initProcessorCounts(WindowsCentralProcessor.java:149)
at oshi.hardware.common.AbstractCentralProcessor.(AbstractCentralProcessor.java:73)
at oshi.hardware.platform.windows.WindowsCentralProcessor.(WindowsCentralProcessor.java:68)
at oshi.hardware.platform.windows.WindowsHardwareAbstractionLayer.createProcessor(WindowsHardwareAbstractionLayer.java:60)
at oshi.util.Memoizer$1.get(Memoizer.java:87)
at oshi.hardware.common.AbstractHardwareAbstractionLayer.getProcessor(AbstractHardwareAbstractionLayer.java:66)
at de.unijena.bioinf.ms.frontend.core.ApplicationCore.(ApplicationCore.java:285)
at de.unijena.bioinf.ms.frontend.SiriusCLIApplication.run(SiriusCLIApplication.java:108)
at de.unijena.bioinf.ms.frontend.SiriusCLIApplication.main(SiriusCLIApplication.java:53)
at de.unijena.bioinf.ms.frontend.SiriusGUIApplication.main(SiriusGUIApplication.java:56)
SEVERE 17:29:45 - Unexpected Error!
java.lang.ExceptionInInitializerError
at de.unijena.bioinf.ms.frontend.SiriusCLIApplication.run(SiriusCLIApplication.java:108)
at de.unijena.bioinf.ms.frontend.SiriusCLIApplication.main(SiriusCLIApplication.java:53)
at de.unijena.bioinf.ms.frontend.SiriusGUIApplication.main(SiriusGUIApplication.java:56)
Caused by: java.lang.RuntimeException: java.lang.IllegalStateException: Unmapped relationship: 7
at de.unijena.bioinf.ms.frontend.core.ApplicationCore.(ApplicationCore.java:305)
... 3 more
Caused by: java.lang.IllegalStateException: Unmapped relationship: 7
at com.sun.jna.platform.win32.WinNT$SYSTEM_LOGICAL_PROCESSOR_INFORMATION_EX.fromPointer(WinNT.java:3033)
at com.sun.jna.platform.win32.Kernel32Util.getLogicalProcessorInformationEx(Kernel32Util.java:715)
at oshi.driver.windows.LogicalProcessorInformation.getLogicalProcessorInformationEx(LogicalProcessorInformation.java:61)
at oshi.hardware.platform.windows.WindowsCentralProcessor.initProcessorCounts(WindowsCentralProcessor.java:149)
at oshi.hardware.common.AbstractCentralProcessor.(AbstractCentralProcessor.java:73)
at oshi.hardware.platform.windows.WindowsCentralProcessor.(WindowsCentralProcessor.java:68)
at oshi.hardware.platform.windows.WindowsHardwareAbstractionLayer.createProcessor(WindowsHardwareAbstractionLayer.java:60)
at oshi.util.Memoizer$1.get(Memoizer.java:87)
at oshi.hardware.common.AbstractHardwareAbstractionLayer.getProcessor(AbstractHardwareAbstractionLayer.java:66)
at de.unijena.bioinf.ms.frontend.core.ApplicationCore.(ApplicationCore.java:285)
... 3 more
@mfleisch mfleisch added the Win11 label Dec 15, 2021
@mfleisch mfleisch self-assigned this Dec 15, 2021
@mfleisch
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Hey,
thanks for the report. We currently have no Windows 11 infrastructure available for detailed testing but are working on it.

However, I deployed a pre-release version that might fix your problem. Can you please try if the the following version is working.
https://github.com/boecker-lab/sirius/releases/tag/v4.9.11-SNAPSHOT

@mfleisch
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FYI: you can also use the new 4.9.12 release for testing.

@mfleisch mfleisch added the fixed label Mar 16, 2022
mfleisch pushed a commit that referenced this issue Nov 3, 2023
Merge branch '59-paras-vs-params' into 'master'
4a37c65 
Renaming typos and bad name Choices

Closes #53, #54, #58, #57, and #59

See merge request bright-giant/sirius/sirius-frontend!18
mfleisch pushed a commit that referenced this issue Aug 2, 2024
Merge branch '53-remove-isclosingafterparsing-from-de-unijena-bioinf-…
ef07ed0 
…babelms-parser-and-allow-for-multiple-calls' into 'master'

Resolve "Remove `isClosingAfterParsing` from `de.unijena.bioinf.babelms.Parser` and allow for multiple calls to parse"

Closes #53

See merge request bright-giant/sirius/sirius-libs!28
mfleisch pushed a commit that referenced this issue Aug 2, 2024
Merge branch '300-merge-sirius-libs-into-sirius-frontend-to-create-a-…
b2ff245 
…mono-repo' into 'master'

Resolve "Merge sirius-libs into sirius-frontend to create a mono repo."

Closes #300, #132, #126, #123, #128, #125, #127, #124, #122, #121, #120, #109, #115, #106, #99, #112, #111, #61, #110, #103, #108, #107, #104, #221, #102, #98, #198, #92, #94, #93, #85, #84, #87, #76, #56, #73, #32, #70, #65, #43, #63, #33, #53, #58, #59, #57, #54, #52, #41, #47, #50, #49, #48, #39, #46, #37, #38, #27, #34, #22, #31, #28, #18, #23, #21, #19, #9, #240, #280, #254, #242, #246, #238, #156, #25, #155, #189, #172, #154, #11, #6, #16, and #4

See merge request bright-giant/sirius/sirius-frontend!106
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@mfleisch @linkai1208