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JP-3705: Remove deprecated nlow and nhigh parameters from outlier detection step #8870

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merged 3 commits into from
Oct 10, 2024

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@emolter emolter commented Oct 10, 2024

Resolves JP-3705

Closes #8705

This PR removes the nlow and nhigh parameters from outlier detection, which were already deprecated in a previous build.

My IDE also noticed that the _STEP_MODES variable in outlier_detection_step.py is unused anywhere in the repository, so I snuck in its removal as well.

Tasks

  • request a review from someone specific, to avoid making the maintainers review every PR
  • add a build milestone, i.e. Build 11.3 (use the latest build if not sure)
  • Does this PR change user-facing code / API? (if not, label with no-changelog-entry-needed)
    • write news fragment(s) in changes/: echo "changed something" > changes/<PR#>.<changetype>.rst (see below for change types)
    • update or add relevant tests
    • update relevant docstrings and / or docs/ page
    • start a regression test and include a link to the running job (click here for instructions)
      • Do truth files need to be updated ("okified")?
        • after the reviewer has approved these changes, run okify_regtests to update the truth files
  • if a JIRA ticket exists, make sure it is resolved properly
news fragment change types...
  • changes/<PR#>.general.rst: infrastructure or miscellaneous change
  • changes/<PR#>.docs.rst
  • changes/<PR#>.stpipe.rst
  • changes/<PR#>.datamodels.rst
  • changes/<PR#>.scripts.rst
  • changes/<PR#>.fits_generator.rst
  • changes/<PR#>.set_telescope_pointing.rst
  • changes/<PR#>.pipeline.rst

stage 1

  • changes/<PR#>.group_scale.rst
  • changes/<PR#>.dq_init.rst
  • changes/<PR#>.emicorr.rst
  • changes/<PR#>.saturation.rst
  • changes/<PR#>.ipc.rst
  • changes/<PR#>.firstframe.rst
  • changes/<PR#>.lastframe.rst
  • changes/<PR#>.reset.rst
  • changes/<PR#>.superbias.rst
  • changes/<PR#>.refpix.rst
  • changes/<PR#>.linearity.rst
  • changes/<PR#>.rscd.rst
  • changes/<PR#>.persistence.rst
  • changes/<PR#>.dark_current.rst
  • changes/<PR#>.charge_migration.rst
  • changes/<PR#>.jump.rst
  • changes/<PR#>.clean_flicker_noise.rst
  • changes/<PR#>.ramp_fitting.rst
  • changes/<PR#>.gain_scale.rst

stage 2

  • changes/<PR#>.assign_wcs.rst
  • changes/<PR#>.badpix_selfcal.rst
  • changes/<PR#>.msaflagopen.rst
  • changes/<PR#>.nsclean.rst
  • changes/<PR#>.imprint.rst
  • changes/<PR#>.background.rst
  • changes/<PR#>.extract_2d.rst
  • changes/<PR#>.master_background.rst
  • changes/<PR#>.wavecorr.rst
  • changes/<PR#>.srctype.rst
  • changes/<PR#>.straylight.rst
  • changes/<PR#>.wfss_contam.rst
  • changes/<PR#>.flatfield.rst
  • changes/<PR#>.fringe.rst
  • changes/<PR#>.pathloss.rst
  • changes/<PR#>.barshadow.rst
  • changes/<PR#>.photom.rst
  • changes/<PR#>.pixel_replace.rst
  • changes/<PR#>.resample_spec.rst
  • changes/<PR#>.residual_fringe.rst
  • changes/<PR#>.cube_build.rst
  • changes/<PR#>.extract_1d.rst
  • changes/<PR#>.resample.rst

stage 3

  • changes/<PR#>.assign_mtwcs.rst
  • changes/<PR#>.mrs_imatch.rst
  • changes/<PR#>.tweakreg.rst
  • changes/<PR#>.skymatch.rst
  • changes/<PR#>.exp_to_source.rst
  • changes/<PR#>.outlier_detection.rst
  • changes/<PR#>.tso_photometry.rst
  • changes/<PR#>.stack_refs.rst
  • changes/<PR#>.align_refs.rst
  • changes/<PR#>.klip.rst
  • changes/<PR#>.spectral_leak.rst
  • changes/<PR#>.source_catalog.rst
  • changes/<PR#>.combine_1d.rst
  • changes/<PR#>.ami.rst

other

  • changes/<PR#>.wfs_combine.rst
  • changes/<PR#>.white_light.rst
  • changes/<PR#>.cube_skymatch.rst
  • changes/<PR#>.engdb_tools.rst
  • changes/<PR#>.guider_cds.rst

@emolter emolter marked this pull request as ready for review October 10, 2024 14:13
@emolter emolter requested a review from a team as a code owner October 10, 2024 14:13
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codecov bot commented Oct 10, 2024

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 61.79%. Comparing base (a84347b) to head (77e0639).
Report is 448 commits behind head on main.

Additional details and impacted files
@@            Coverage Diff             @@
##             main    #8870      +/-   ##
==========================================
- Coverage   61.79%   61.79%   -0.01%     
==========================================
  Files         377      377              
  Lines       38832    38831       -1     
==========================================
- Hits        23997    23996       -1     
  Misses      14835    14835              

☔ View full report in Codecov by Sentry.
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Looks good, pending clean regression tests.

changes/8870.outlier_detection.rst Outdated Show resolved Hide resolved
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emolter commented Oct 10, 2024

@emolter emolter requested a review from melanieclarke October 10, 2024 18:17
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emolter commented Oct 10, 2024

all regression tests are passing

@emolter emolter merged commit eb3afde into spacetelescope:main Oct 10, 2024
30 checks passed
@emolter emolter deleted the JP-3705 branch October 10, 2024 18:35
@emolter emolter removed the request for review from braingram October 10, 2024 18:46
hayescr pushed a commit to hayescr/jwst that referenced this pull request Oct 29, 2024
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Remove nlow and nhigh parameters from outlier_detection
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