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Update to develop branch following the merge to main for release 2.0.0 #800

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merged 49 commits into from
Dec 7, 2024

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@tennlee tennlee commented Dec 7, 2024

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tennlee and others added 30 commits December 7, 2024 13:43
Update to tutorial for Brier Score using DOI
* feat: Add Positive Predictive Value function and update alias docstrings

Signed-off-by: arshia <[email protected]>
Co-authored-by: Arshia Sharma <[email protected]>
Co-authored-by: Stephanie Chong <[email protected]>
* Update to black version. No files needed changing.
* Update files for compatibility with latest version of black
* Update pre-commit with the update to the black version
* Add Jetbrains IDE files to .gitignore
* Pin dependencies during hatch builds
* Add zenodo entry
* Update mypy version
* Update pylint version
* Bring files up to compliance
* all of the 'chainging_func_kwargs' are changed to 'chaining_func_kwargs'
Jupyter notebook rerun everything to reflect the changes on method name

* This file change was inadvertently included from another feature branch

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Co-authored-by: jifu2274 <[email protected]>
…change (#781)

A spelling correction has been made to an argument name, which is technically a breaking change, which necessitates a major version update.
* Add PyCon AU video to readme

Signed-off-by: Stephanie Chong <[email protected]>

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Signed-off-by: Stephanie Chong <[email protected]>
* Add information about Zenodo archive to README

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Signed-off-by: Stephanie Chong <[email protected]>
* feat: add ppv function and update alias docstrings
* update included.md


Co-authored-by: Stephanie Chong <[email protected]>
Signed-off-by: arshia <[email protected]>

* Update docs/included.md

Co-authored-by: Stephanie Chong <[email protected]>
Signed-off-by: arshia <[email protected]>

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Signed-off-by: arshia <[email protected]>
Co-authored-by: Arshia Sharma <[email protected]>
Co-authored-by: Stephanie Chong <[email protected]>
* Refactored isotonic regression function from scikit-learn to scipy

Please note, this was manually speed tested, and proved to be faster according to that test regime. So this PR reduces complexity and may speed things up at the same time.

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Signed-off-by: Tennessee Leeuwenburg <[email protected]>
Co-authored-by: AJ Fisher <[email protected]>
Co-authored-by: Tennessee Leeuwenburg <[email protected]>
Co-authored-by: Stephanie Chong <[email protected]>
* Update contributor guide to include more information on forking and branch management
Add a new emerging score - Risk Matrix
Co-authored-by: Stephanie Chong <[email protected]>
Co-authored-by: Nicholas Loveday <[email protected]>
Signed-off-by: Tennessee Leeuwenburg <[email protected]>
tennlee and others added 19 commits December 7, 2024 13:43
Modify column and row labels for HTML rendered contingency table
Update contigency table tutorial to match.
* Update admonitions for emerging metrics in API, tutorial and README, plus add an admonition to included page in docs
* Add the new score "brier_score_for_ensemble" with the fair brier correction

Co-authored-by: Stephanie Chong <[email protected]>
Signed-off-by: Tennessee Leeuwenburg <[email protected]>
Co-authored-by: Tennessee Leeuwenburg <[email protected]>
Signed-off-by: Nicholas Loveday <[email protected]>
@tennlee tennlee merged commit a46db74 into develop Dec 7, 2024
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9 participants