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[RELEASE] cugraph v0.16#1228

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raydouglass merged 242 commits intomainrapidsai/cugraph:mainfrom branch-0.16rapidsai/cugraph:branch-0.16Copy head branch name to clipboardOct 21, 2020

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Commits on Aug 6, 2020

• DOC v0.16 Updates

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Commits on Aug 7, 2020

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Commits on Aug 13, 2020

• Merge pull request #1071 from rapidsai/branch-0.15

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Commits on Aug 14, 2020

• Merge pull request #1078 from rapidsai/branch-0.15

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• Add sort optimization for each partition in renumbering

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• a few edits lost in merges

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• average multiple random runs in balanced cut test, remove some extraneous debuggin

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• rename store_row_major to store_transposed

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• Merge branch 'branch-0.16' into fea_sort_renumbering_partitions

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• fix flake8 and clang format issues

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• remove tests I added for debugging

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• push up number of random tests

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• update analyzeClustering calls in notebooks

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Commits on Aug 17, 2020

• clean up a few debugging artifacts

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• fix parameters to add_internal_vertex_id

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• Merge pull request #1084 from rapidsai/branch-0.15

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• updates to spectral clustering eliminate need to preserve order for ecg

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• don't need the preserve_order flag here either

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Commits on Aug 18, 2020

• initial implementation of new graph class

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• Merge branch 'branch-0.15' of github.com:rapidsai/cugraph into fea_2d_graph

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• Merge pull request #1091 from rapidsai/branch-0.15

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• Merge pull request #1096 from rapidsai/branch-0.15

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Commits on Aug 19, 2020

• fix compile errors

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• update CMakeLists.txt

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• Merge branch 'branch-0.15' of github.com:rapidsai/cugraph into fea_2d_graph

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• move graph.hpp to the experimental directory

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• Merge branch 'branch-0.16' of github.com:rapidsai/cugraph into fea_2d_graph

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• refactor graph classes (create graph_base_t common for both SG and MG)

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• Make renumbering lazy

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• fix flake8 errors

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Commits on Aug 20, 2020

• Merge pull request #1102 from rapidsai/branch-0.15

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• Merge branch 'branch-0.16' of github.com:rapidsai/cugraph into fea_2d_graph

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• Merge pull request #1103 from rapidsai/branch-0.15

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Commits on Aug 21, 2020

• Merge pull request #1109 from rapidsai/branch-0.15

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• add graph_view.hpp & graph_utils.cuh

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• add graph test

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• rename compute_row_degree to compute_major_degree to avoid confusion

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• add a FIXME comment

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• Merge pull request #1110 from rapidsai/branch-0.15

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• add persist calls so we don't have to recompute renumbering

  

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Commits on Aug 22, 2020

• Merge pull request #1081 from ChuckHastings/fea_sort_renumbering_partitions

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Commits on Aug 24, 2020

• Merge branch 'branch-0.15' of github.com:rapidsai/cugraph into fea_2d_graph

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• bug fixes

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• expand experimental graph explicit template instantiation

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• replace deprecated rmm::mr::get_default_resource

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• update change log

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Commits on Aug 25, 2020

• Merge pull request #1118 from rapidsai/branch-0.15

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• Merge remote-tracking branch 'upstream/branch-0.16' into fea_2d_graph

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Commits on Aug 26, 2020

• Merge branch-0.15 into branch-0.16

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• Merge pull request #1120 from BradReesWork/branch-0.16-merge-0.15

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• Merge branch 'main' into branch-0.15

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• Merge pull request #1121 from rapidsai/branch-0.15

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• Merge pull request #1115 from seunghwak/bug_deprecated

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• Merge pull request #31 from rapidsai/branch-0.16

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• Updated CHANGELOG.md.

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Commits on Aug 27, 2020

• Merge pull request #1127 from rapidsai/branch-0.15

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• update compute_major_degree to work with both a vector of rmm::device_uvector and pointers

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• Proto interface and implementation.

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Commits on Aug 28, 2020

• Centralizing test data to a few common sets

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• reference doc

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• update

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• add graph_view.cu for error checks using thrust

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• Updated partition_manager_t functionality.

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• docs

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• changed formating

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• better formating

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• formating

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• pr 1129 changelog

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• type

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• more ref

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• re-add edge_t number_of_edges to graph_t constructor, sum edgelists[i].number_of_edges is sum of the local edges

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• add error checks to graph_t

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• Merge branch 'branch-0.16' of github.com:rapidsai/cugraph into fea_2d_graph

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Commits on Aug 31, 2020

• add error checkes/comments for graph_t & graph_view_t

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• update change log

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• clang-format

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• updates

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• change log

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• fixed

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• dropped changelog entry

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• updated changelog for pr 1129

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• change dataset type to speed to tests

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• fixed typos

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• reset

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• one more try

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• addressing code review

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• Update CHANGELOG.md

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• Update CHANGELOG.md

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• Update CHANGELOG.md

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• Created per-worker subcomm_factory_t to fix erroneous implementation.

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Commits on Sep 1, 2020

• Merge branch 'branch-0.16' into 0.16-disjoint

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• flake8 errors

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• FIX set +e on style check script

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• DOC Update changelog

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• DOC Document why set +x is needed

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• minor fixes

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• address reviewer comments

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• update comments on currently public (but will become private in the future) APIs

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• fix spelling errors

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• clang-format

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• Merge pull request #1131 from raydouglass/fix-style

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Commits on Sep 2, 2020

• struct_t partition_t to class_t partition_t

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• replace for loop with std::any_of

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• misc updates

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• factor out matrix market garph file read

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• Merge branch 'branch-0.16' of github.com:rapidsai/cugraph into fea_2d_graph

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• Added HITS and sorted algorithms alphabetically

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• fix doc issues and added additional docs

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• dropped regular karate to reduce number of tests. Now only the douible karate set is processed

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• removed Renumbering since it is now in Graph. Drop RMAT since it is not implemented

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• fix docstring errors

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• Merge branch '0.16-disjoint' of https://github.com/BradReesWork/cugraph into 0.16-disjoint

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• flake8 issues

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• add necessary stream syncs

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• fix compile error

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• fixed test issues

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Commits on Sep 3, 2020

• restructure louvain/leiden in preparation for MNMG work

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• Merge branch 'branch-0.16' into fea_mnmg_louvain

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• clang format issues

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• upgrade cub/thrust to latest commits

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• add to changelog

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• addressing dask issues

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• flake8 unused fixes

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• added missing copyright

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• added a version of Karate that contains a second disjoint version

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• Change calling sequence for C++ louvain to return pair of values instead of passing pointers/references

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• add handle to louvain/leiden/ecg

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• clang format updates

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• added additional blogs

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• looking at comms time-out issues

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• addeed a call to gc.coolect()

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• flake8 issue

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• use the cub submodule in thrust instead of fetching it

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• updated dataset list again

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• fix typo

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• Merge pull request #1129 from BradReesWork/0.16-disjoint

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Commits on Sep 4, 2020

• Merge branch 'branch-0.16' of github.com:rapidsai/cugraph into fea_2d_graph

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• remove NCC_TEST

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• Fixed sub-comm partitioning key-name mechanism.

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• update graph_t & graph_view_t to take properties_t object

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• uint32_t & uint64_t to int32_t & int64_t in expliciit template instantiation

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• clang-format

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Commits on Sep 5, 2020

• Merge branch 'branch-0.16' into upgrade-cub-thrust

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• CUB_INCLUDE_DIR is not needed since Thrust has a symlink

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Commits on Sep 8, 2020

• Merge pull request #1098 from seunghwak/fea_2d_graph

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Commits on Sep 9, 2020

• Merge branch 'branch-0.16' into upgrade-cub-thrust

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• update changelog

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• Merge branch 'branch-0.16' into fea_sg_louvain

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• address PR comments

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Commits on Sep 10, 2020

• safety commit - building with new MG Louvain placeholders

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• Renamed graph_new to graph_primtypes to hopefully clarify its contents, removed unused graph_new.pxd (which was identical to graph.pxd, which then got renamed to graph_primtypes.pxd)

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• WIP for calling MG Louvain from Cython wrapper, calling Dask correctly, etc.

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• Added FIXME to test to describe an additional check that's needed

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• Temp fix for a circular import problem

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• Merge pull request #1132 from rongou/upgrade-cub-thrust

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• respond to PR comments

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• Further updates to Louvain MG cython/wrapper code. No longer builds at the moment since it's not calling the Louvain C++ API which has not been merged yet.

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• Merge branch 'branch-0.16' into fea_sg_louvain

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• fix clang errors

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• fixed doc error of target than destination

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• doc updates

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• Merge remote-tracking branch 'upstream/branch-0.16' into branch-0.16-mglouvaintesting2

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• Merge pull request #1135 from ChuckHastings/fea_sg_louvain

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Commits on Sep 11, 2020

• Updated to properly call new Louvain C++ API from cython wrapper, test seems to be running and returning expected results now (based on comparison to non-dask SG test).

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Commits on Sep 14, 2020

• Added C++ graph container factory function and changed Louvain wrappers to call it.

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• Added PR 1139 to CHANGELOG.md

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• updated docs

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• added jaccard_coefficient for Nx compatability

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• jaccard_coefficient

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• fixed typo

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Commits on Sep 15, 2020

• flake8 fixes

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• changelog

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• updated test to say "edge betweenness centrality"

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• made triangle plural

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• Addressed code review request on removing partition_manager_t class.

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• Merge pull request #1144 from BradReesWork/0.16-doc-fixes

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• Updates from review feedback: added/updated FIXMEs, using a proper scoped enum, removed dead code, removed unneeded std::move()

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• Merge remote-tracking branch 'upstream/branch-0.16' into branch-0.16-mglouvaintesting2

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Commits on Sep 16, 2020

• Chnaged union to hold pointers, but having problem with a double free.

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• Fixed double free by passing a reference to a graph_container_t instead of a value which gets copied.

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• Started adding new graph_t class instantiations, not done yet and not yet enabled.

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• C++ style fixes

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• Addressed code reviews on key_naming_t.

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• Updated CHANGELOG.md.

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• Addressed review on prefix_ redundancy in key_naming_t.

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• Addressed review feedback: passing const references for the container, added documentation, added deleted copy and assignment operators, added more legacy graph types for future expansion during th…

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• C++ style check fix

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• Fixed description of local_* parameters.

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• Merge pull request #1124 from aschaffer/fea_ext_split_comms

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Commits on Sep 17, 2020

• Merge pull request #1139 from rlratzel/branch-0.16-mglouvaintesting2

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Commits on Sep 18, 2020

• [REVIEW] update RAFT git tag (#1150)

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Commits on Sep 21, 2020

• [REVIEW] Remove RMM library dependency and CXX11 ABI handling (#1155)

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Commits on Sep 22, 2020

• [ENG] Graph container cleanup, added arg for instantiating legacy types and switch statements to factory function (#1152)

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Commits on Sep 23, 2020

• [REVIEW] Simple edge list generator (#1145)

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• [REVIEW] Parquet read and concat within workers (#1149)

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Commits on Sep 25, 2020

• ENH Adding support for NetworkX Graphs as inputs (#1147)

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• Louvain API update to use graph_container_t (#1157)

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• [REVIEW] ENH updating Nx compatibility testing (#1162)

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• Pattern accelerator based implementation of PageRank, Katz Centrality, BFS, & SSSP (#838)

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• [REVIEW] pass size_t* instead of int_t[] for raft allgatherv's input parameter displs (#1158)

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• [REVIEW] python 2D shuffling (#1133)

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Commits on Sep 29, 2020

• [REVIEW] Disabled MG tests on single GPU (#1168)

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• BUG fix misspelling of function calls in asserts causing debug build to fail (#1166)

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• [REVIEW] ENH added more Nx compatibility (#1165)

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• [REVIEW] MG symmetrize and conda env updates (#1164)

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Commits on Sep 30, 2020

• FEA Multinode extension for pattern accelerator based PageRank, Katz Centrality, BFS, and SSSP implementations (C++ part) (#1151)

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Commits on Oct 1, 2020

• [REVIEW] Update ci/local/README.md (#1176)

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• [REVIEW] ENH Integrate 2D shuffling and latest Louvain API (#1163)

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• [REVIEW] BLD Added RAPIDS cpp packages to cugraph dev env (#1169)

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Commits on Oct 2, 2020

• [REVEIW] BLD Adopt RAFT model for cuhornet dependency (#1180)

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• [REVIEW] FIX Fix notebook error handling (#1181)

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• ENH Refactored cython graph factory code to scale to additional data types (#1178)

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Commits on Oct 5, 2020

• [REVEIW] BLD Installing raft headers under cugraph (#1186)

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• [REVEIW] BLD getting latest tags (#1184)

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Commits on Oct 7, 2020

• [REVIEW] BUG fix benchmark notebooks for recent cudf changes (#1192)

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Commits on Oct 9, 2020

• [REVIEW] BUG Move subcomms init outside of individual algorithm functions (#1196)

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• [REVIEW] BUG segfault in python test suite (#1199)

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Commits on Oct 10, 2020

• [REVIEW] BUG Remove deprecated call to from_gpu_matrix (#1198)

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Commits on Oct 11, 2020

• [Review] Adding CUDA architecture code for sm80 and aarch64 (#1156)

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Commits on Oct 12, 2020

• [REVIEW] 2D cython/python infrastructure- PAGERANK (#1175)

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Commits on Oct 13, 2020

• [REVIEW] 2D cython/python infrastructure- BFS & SSSP (#1177)

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• [REVIEW] BUG Test MNMG pattern accelerator based PageRank, BFS, and SSSP (#1174)

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Commits on Oct 14, 2020

• [REVIEW] FEA MNMG louvain implementation (#1172)

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• [REVIEW] DOC Adding Nx transition doc and preping for more (#1217)

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• [REVIEW] update dask docs (#1223)

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Commits on Oct 15, 2020

• [REVIEW] ENH Added min CUDA version check to MG Louvain (#1222)

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Commits on Oct 20, 2020

• [REVIEW] BUG Temporarily disabling C++ tests for 0.16 (#1233)

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Commits on Oct 21, 2020

• Update CHANGELOG.md

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• Require ucx-proc=*=gpu

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• Merge pull request #1240 from jakirkham/req_ucx_proc

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